Table 1 Tobacco VQ genes and accession numbers. CDS: coding sequence
Gene Locus | Gene Length | Start | End | Exon Number | CDS (bp) | Protein (aa) | Amino acid proportion (%) | pI | ||
|---|---|---|---|---|---|---|---|---|---|---|
Alpha helix (Hh) | Beta-sheet (E) | Loop/Random coil (L/C) | ||||||||
Nitab4.5_0002305g0070.1 | 588 | 399,194 | 399,781 | 1 | 588 | 195 | 28/14.36% | 33/16.92% | 134/68.72% | 5.83 |
Nitab4.5_0000138g0140.1 | 564 | 1,093,775 | 1,094,338 | 1 | 564 | 187 | 29/15.51% | 28/14.97% | 130/69.52% | 5.92 |
Nitab4.5_0000443g0160.1 | 627 | 826,332 | 826,958 | 1 | 627 | 208 | 27/12.98% | 36/17.31% | 145/69.71% | 4.98 |
Nitab4.5_0008965g0010.1 | 648 | 78,700 | 79,347 | 1 | 648 | 215 | 26/12.09% | 45/20.93 | 144/66.98% | 6.29 |
Nitab4.5_0008708g0020.1 | 675 | 84,655 | 85,329 | 1 | 675 | 224 | 54/24.11% | 43/19.20% | 127/56.70% | 4.72 |
Nitab4.5_0000443g0140.1 | 675 | 852,301 | 852,975 | 1 | 675 | 224 | 60/26.79% | 43/19.20% | 121/54.02% | 4.97 |
Nitab4.5_0002570g0040.1 | 603 | 93,406 | 94,008 | 1 | 603 | 200 | 34/17.00% | 28/14.50% | 137/68.50% | 10.6 |
Nitab4.5_0000073g0510.1 | 600 | 1,448,350 | 1,448,949 | 1 | 600 | 199 | 27/13.57% | 30/15.08% | 142/71.36% | 8.34 |
Nitab4.5_0000170g0400.1 | 744 | 926,895 | 927,638 | 2 | 529 | 202 | 31/15.35% | 32/15.84% | 139/68.81% | 10.46 |
Nitab4.5_0002232g0070.1 | 612 | 396,497 | 397,108 | 1 | 612 | 203 | 25/12.32% | 31/15.27% | 147/72.41% | 10.32 |
Nitab4.5_0005431g0010.1 | 1203 | 72,449 | 73,651 | 1 | 1203 | 400 | 68/17.00% | 37/9.25% | 295/73.75% | 6.45 |
Nitab4.5_0000421g0040.1 | 894 | 164,669 | 165,562 | 1 | 894 | 297 | 31/10.44% | 25/8.42% | 241/81.14% | 6.22 |
Nitab4.5_0002098g0010.1 | 879 | 132,258 | 133,136 | 1 | 879 | 292 | 24/8.22% | 31/10.62% | 237/81.16% | 5.95 |
Nitab4.5_0008140g0010.1 | 1674 | 39,111 | 40,784 | 3 | 1338 | 445 | 43/9.66% | 25/5.62% | 377/84.72% | 7.33 |
Nitab4.5_0001729g0010.1 | 1404 | 94,292 | 95,695 | 1 | 1404 | 467 | 32/6.85% | 44/9.42% | 391/83.73% | 6.49 |
Nitab4.5_0001270g0170.1 | 660 | 438,569 | 439,228 | 1 | 660 | 219 | 49/22.37% | 31/14.16% | 139/63.47% | 5.91 |
Nitab4.5_0000123g0220.1 | 660 | 409,929 | 410,588 | 1 | 660 | 220 | 45/20.55% | 21/9.59% | 15./69.86% | 6.3 |
Nitab4.5_0000062g0280.1 | 657 | 1,034,829 | 1,035,485 | 1 | 657 | 218 | 35/16.06% | 19/8.72% | 164/75.23% | 9.16 |
Nitab4.5_0010768g0030.1 | 10,278 | 14,633 | 24,910 | 9 | 1347 | 449 | 144/32.07% | 90/20.04% | 215/47.88% | 5.57 |
Nitab4.5_0016059g0010.1 | 593 | 9637 | 10,229 | 2 | 321 | 106 | 21/19.81% | 11/10.38% | 74/69.81% | 9.74 |
Nitab4.5_0008385g0010.1 | 863 | 402,586 | 41,148 | 2 | 645 | 214 | 33/15.42% | 24/11.21% | 157/73.36% | 8.34 |
Nitab4.5_0000680g0150.1 | 516 | 696,743 | 697,258 | 1 | 516 | 171 | 30/17.54% | 18/10.53% | 123/71.93% | 6.56 |
Nitab4.5_0000680g0130.1 | 7468 | 604,651 | 612,118 | 2 | 1167 | 388 | 84/21.65% | 36/9.28% | 268/69.07% | 9.08 |
Nitab4.5_0008385g0020.1 | 9020 | 59,372 | 68,391 | 2 | 1143 | 380 | 98/25.79% | 26/6.84% | 256/67.37% | 9.28 |
Nitab4.5_0008558g0010.1 | 2332 | 7920 | 10,251 | 3 | 969 | 322 | 93/28.88% | 40/12.42% | 189/58.70% | 10.24 |
Nitab4.5_0000786g0140.1 | 875 | 3,998,189 | 399,045 | 2 | 804 | 267 | 89/33.33% | 35/13.11% | 143/53.56% | 10.46 |
Nitab4.5_0004604g0010.1 | 948 | 94,021 | 94,968 | 1 | 948 | 315 | 21/6.67% | 14/4.44% | 280/88.89% | 10.67 |
Nitab4.5_0000256g0320.1 | 948 | 966,518 | 967,465 | 1 | 948 | 315 | 22/6.98% | 16/5.08% | 277/87.94% | 10.67 |
Nitab4.5_0003157g0050.1 | 558 | 13,932 | 139,880 | 1 | 558 | 185 | 26/14.05% | 22/11.89% | 137/74.05% | 9.51 |
Nitab4.5_0001271g0090.1 | 537 | 577,237 | 577,773 | 1 | 537 | 178 | 30/16.85% | 23/12.92% | 125/70.22% | 9.79 |
Nitab4.5_0003072g0110.1 | 567 | 198,841 | 199,407 | 1 | 567 | 188 | 22/11.70% | 29/15.43% | 137/72.87% | 9.99 |
Nitab4.5_0004013g0040.1 | 567 | 191,866 | 192,432 | 1 | 567 | 188 | 24/12.77% | 23/12.23% | 141/75.00% | 9.9 |
Nitab4.5_0001652g0050.1 | 783 | 103,509 | 104,291 | 1 | 783 | 260 | 28/10.77% | 26/10.00% | 206/79.23% | 9.42 |
Nitab4.5_0009099g0040.1 | 783 | 73,650 | 74,432 | 1 | 783 | 360 | 30/11.54% | 21/8.08% | 203/78.00% | 9.45 |
Nitab4.5_0001241g0040.1 | 687 | 263,071 | 263,757 | 1 | 687 | 228 | 32/14.04% | 23/10.09% | 173/75.88% | 9.77 |
Nitab4.5_0001336g0060.1 | 684 | 557,974 | 558,657 | 1 | 684 | 227 | 32/14.10% | 26/11.45% | 169/74.45% | 9.77 |
Nitab4.5_0003481g0110.1 | 453 | 209,282 | 209,734 | 1 | 453 | 150 | 58/38.67% | 16/10.67% | 76/50.67% | 6.31 |
Nitab4.5_0005808g0010.1 | 474 | 8127 | 8600 | 1 | 474 | 157 | 54/34.39% | 21/13.38% | 82/52.23% | 5.41 |
Nitab4.5_0000812g0090.1 | 426 | 586,770 | 587,195 | 1 | 426 | 141 | 31/21.99% | 17/12.06% | 93/65.96% | 5 |
Nitab4.5_0004588g0030.1 | 474 | 228,189 | 228,662 | 1 | 474 | 157 | 44/28.03% | 31/19.75% | 82/52.23% | 5.96 |
Nitab4.5_0000349g0050.1 | 10,775 | 152,011 | 162,785 | 2 | 216 | 71 | 39/54.93% | 7/9.86% | 25/35.21% | 8.85 |
Nitab4.5_0002640g0020.1 | 1582 | 61,688 | 63,269 | 2 | 294 | 97 | 49/50.52% | 15/15.46% | 33/34.02% | 9.94 |
Nitab4.5_0000687g0100.1 | 345 | 345,785 | 346,129 | 1 | 345 | 114 | 33/28.95% | 15/13.61% | 66/57.89% | 6.59 |
Nitab4.5_0008548g0020.1 | 351 | 19,094 | 19,444 | 1 | 351 | 116 | 33/28.45% | 15/12.93% | 68/58.62% | 5.87 |
Nitab4.5_0000930g0040.1 | 309 | 607,049 | 607,357 | 1 | 309 | 102 | 29/28.43% | 14/13.73% | 59/57.84% | 5.47 |
Nitab4.5_0022515g0010.1 | 309 | 2522 | 2830 | 1 | 309 | 102 | 23/22.55% | 10/9.80% | 69/67.65% | 6.58 |
Nitab4.5_0000930g0050.1 | 309 | 662,450 | 662,758 | 1 | 309 | 102 | 31/30.39% | 9/8.82% | 62/60.78% | 6.25 |
Nitab4.5_0009599g0020.1 | 318 | 77,300 | 77,617 | 1 | 318 | 105 | 29/27.62% | 12/11.43% | 64/60.95% | 5.4 |
Nitab4.5_0000639g0190.1 | 306 | 579,499 | 579,804 | 1 | 306 | 101 | 36/35.64% | 15/14.85% | 50/49.50% | 9.63 |
Nitab4.5_0000505g0120.1 | 297 | 773,483 | 773,779 | 1 | 297 | 98 | 37/37.76% | 15/15.31% | 46/46.94% | 9.17 |
Nitab4.5_0005080g0020.1 | 360 | 140,722 | 141,081 | 1 | 360 | 119 | 45/37.82% | 15/12.61% | 59/49.58% | 5.34 |
Nitab4.5_0001924g0010.1 | 375 | 39,051 | 39,425 | 1 | 375 | 124 | 51/41.13% | 12/9.68% | 61/49.19% | 5.79 |
Nitab4.5_0002906g0010.1 | 471 | 82,252 | 82,722 | 1 | 471 | 156 | 14/8.97% | 26/16.67% | 116/74.36% | 5.45 |
Nitab4.5_0000489g0090.1 | 552 | 590,481 | 590,132 | 1 | 552 | 183 | 24/13.11% | 23/12.57% | 136/74.32% | 5.7 |
Nitab4.5_0001674g0050.1 | 417 | 331,009 | 331,425 | 1 | 417 | 138 | 14/10.14% | 23/16.67% | 101/73.19% | 9.17 |
Nitab4.5_0006679g0010.1 | 1554 | 144,320 | 145,873 | 2 | 455 | 184 | 28/20.65% | 24/13.64% | 122/66.30% | 9.3 |
Nitab4.5_0000633g0120.1 | 702 | 299,447 | 300,148 | 2 | 510 | 169 | 38/22.49% | 14/8.28% | 117/69.23% | 9.41 |
Nitab4.5_0000299g0270.1 | 765 | 884,677 | 885,441 | 1 | 765 | 254 | 58/22.83% | 26/9.45% | 172/67.72% | 7.83 |
Nitab4.5_0000427g0090.1 | 753 | 785,763 | 786,515 | 2 | 506 | 167 | 38/22.75% | 15/8.98% | 114/68.26% | 9.41 |
Nitab4.5_0004813g0010.1 | 678 | 31,487 | 32,164 | 1 | 678 | 225 | 43/19.11% | 25/11.11% | 157/69.78% | 5.89 |
Nitab4.5_0002121g0030.1 | 678 | 283,134 | 283,811 | 1 | 678 | 225 | 38/16.89% | 25/11.11% | 162/72.00% | 5.89 |