The Number of raw sequencing reads (n)
|
361,671
|
274,269
|
Bases of raw sequencing reads (bp)
|
164,494,414
|
124,608,071
|
The average of read length (bp)
|
454,818
|
454,328
|
Assembleda
|
282,705
|
217,905
|
Partialb
|
50,330
|
33,427
|
Singletonsc
|
18,147
|
15,129
|
Repeatd
|
111
|
242
|
Outliere
|
5,075
|
3,699
|
Too shortf
|
5,273
|
3,831
|
The number of bases, Q20 ≤ (bp)g
|
93,272,495
|
70,812,087
|
The number of reads, Q20 ≤ (n)
|
269,198
|
205,166
|
Isotigs
| | |
Number of isotigs (n)
|
23,821
|
17,813
|
Average count of contigs in the isotigs (n)
|
1.401
|
1.317
|
Largest count of contigs in the isotigs (n)
|
12
|
16
|
The number of isotigs assembled by one contig (n)
|
18,363
|
14,556
|
The total number of bases in the isotig (bp)
|
20,787,054
|
14,965,217
|
The average isotig size (n)
|
872.636
|
840.129
|
N50 isotig size (bp)h
|
1,028
|
977
|
The size of the largest isotig (bp)
|
17,462
|
7,300
|
Singletons
| | |
Number of singletons after SeqClean (minimum length, 100)
|
18,147
|
15,129
|
Number of singletons after Lucy (minimum length, 100)
|
17,054
|
14,310
|
Number of valid singletons after Lucy
|
16,958
|
14,244
|