Table 1 454 Pyrosequencing results for the pepper ( Capsicum annuum ) varieties, Saengryeg 211 and Saengryeg 213
454 pyrosequencing terms | Saengryeg 211 | Saengryeg 213 |
|---|---|---|
Reads | Â | Â |
 The Number of raw sequencing reads (n) | 361,671 | 274,269 |
 Bases of raw sequencing reads (bp) | 164,494,414 | 124,608,071 |
 The average of read length (bp) | 454,818 | 454,328 |
 Assembleda | 282,705 | 217,905 |
 Partialb | 50,330 | 33,427 |
 Singletonsc | 18,147 | 15,129 |
 Repeatd | 111 | 242 |
 Outliere | 5,075 | 3,699 |
 Too shortf | 5,273 | 3,831 |
 The number of bases, Q20 ≤ (bp)g | 93,272,495 | 70,812,087 |
 The number of reads, Q20 ≤ (n) | 269,198 | 205,166 |
Isotigs | Â | Â |
 Number of isotigs (n) | 23,821 | 17,813 |
 Average count of contigs in the isotigs (n) | 1.401 | 1.317 |
 Largest count of contigs in the isotigs (n) | 12 | 16 |
 The number of isotigs assembled by one contig (n) | 18,363 | 14,556 |
 The total number of bases in the isotig (bp) | 20,787,054 | 14,965,217 |
 The average isotig size (n) | 872.636 | 840.129 |
 N50 isotig size (bp)h | 1,028 | 977 |
 The size of the largest isotig (bp) | 17,462 | 7,300 |
Singletons | Â | Â |
 Number of singletons after SeqClean (minimum length, 100) | 18,147 | 15,129 |
 Number of singletons after Lucy (minimum length, 100) | 17,054 | 14,310 |
 Number of valid singletons after Lucy | 16,958 | 14,244 |