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Table 1 Putative cis-elements in d4h-like promoter

From: An active Catharanthus roseus desacetoxyvindoline-4-hydroxylase-like gene and its transcriptional regulatory profile

Motif name Sequence Position Motif numbers Function
O2-site GATGATGTGG −2858/-2849(−) 1 Cis-acting regulatory element involved in zein metabolism regulation
TC-rich repeats GTTTTCTTAC −2422/-2413(+) 2 Cis-acting element involved in defense and stress responsiveness
−1254/-1245(+)
Sp1 CC(G/A)CCC −2463/-2458(−) 2 Light responsive element
−2369/-2364(+)
HSE AAAAAATTTC −2307/-2298(+) 2 Cis-acting element involved in heat stress responsiveness
−359/-350(+)
Box 4 ATTAAT −2236/-2231(+) 4 Part of a conserved DNA module involved in light responsiveness
−1677/-1672(+)
−800/-795(+)
−236/-231(+)
TCCC-motif TCTCCCT −2253/-2247(+) 1 Part of a light responsive element
ARE TGGTTT −2207/-2202(+) 3 Cis-acting regulatory element essential for the anaerobic induction
−2092/-2087(+)
−186/-181(−)
TGACG-motif TGACG −2167/-2163(+) 2 Cis-acting regulatory element involved in the MeJA-responsiveness
−1180/-1176(+)
Box I TTTCAAA −1980/-1974(+) 4 Light responsive element
−1411/-1405(+)
−380/-374(+)
−914/-908(−)
I-box AAGATAAGA −1965/-1957(−) 3 Part of a light responsive element
−1140/-1132(−)
−1085/-1077(−)
Box II TGGTAATAA −1251/-1243(−) 1 Part of a light responsive element
ERE ATTTCAAA −1786/-1779(−) 2 Ethylene-responsive element
−381/-374(+)
Box III CATTTACACT −1650/-1642(+) 1 Protein binding site
GA-motif ATAGATAA −1557/-1550(+) 2 Part of a light responsive element
−671/-664(+)
AT-rich sequence TAAAATACT −1419/-1411(+) 1 Element for maximal elicitor-mediated activation (2copies)
TCT-motif TCTTAC −1338/-1333(+) 1 Part of a light responsive element
GARE-motif AAACAGA −892/-886(−) 1 Gibberellin-responsive element
GAG-motif AGAGAGT −286/-280(−) 1 Part of a light responsive element
G-box CACATGG −227/-221(−) 1 Cis-acting regulatory element involved in light responsiveness
circadian CAANNNNATC −156/-146(+) 1 Cis-acting regulatory element involved in circadian control
TATA-box TATA(T/A)A(T/A)A −25/-18(+) 1 Core promoter element around −30 of transcription start