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Table 1 Putative cis-elements in d4h-like promoter

From: An active Catharanthus roseus desacetoxyvindoline-4-hydroxylase-like gene and its transcriptional regulatory profile

Motif name

Sequence

Position

Motif numbers

Function

O2-site

GATGATGTGG

−2858/-2849(−)

1

Cis-acting regulatory element involved in zein metabolism regulation

TC-rich repeats

GTTTTCTTAC

−2422/-2413(+)

2

Cis-acting element involved in defense and stress responsiveness

−1254/-1245(+)

Sp1

CC(G/A)CCC

−2463/-2458(−)

2

Light responsive element

−2369/-2364(+)

HSE

AAAAAATTTC

−2307/-2298(+)

2

Cis-acting element involved in heat stress responsiveness

−359/-350(+)

Box 4

ATTAAT

−2236/-2231(+)

4

Part of a conserved DNA module involved in light responsiveness

−1677/-1672(+)

−800/-795(+)

−236/-231(+)

TCCC-motif

TCTCCCT

−2253/-2247(+)

1

Part of a light responsive element

ARE

TGGTTT

−2207/-2202(+)

3

Cis-acting regulatory element essential for the anaerobic induction

−2092/-2087(+)

−186/-181(−)

TGACG-motif

TGACG

−2167/-2163(+)

2

Cis-acting regulatory element involved in the MeJA-responsiveness

−1180/-1176(+)

Box I

TTTCAAA

−1980/-1974(+)

4

Light responsive element

−1411/-1405(+)

−380/-374(+)

−914/-908(−)

I-box

AAGATAAGA

−1965/-1957(−)

3

Part of a light responsive element

−1140/-1132(−)

−1085/-1077(−)

Box II

TGGTAATAA

−1251/-1243(−)

1

Part of a light responsive element

ERE

ATTTCAAA

−1786/-1779(−)

2

Ethylene-responsive element

−381/-374(+)

Box III

CATTTACACT

−1650/-1642(+)

1

Protein binding site

GA-motif

ATAGATAA

−1557/-1550(+)

2

Part of a light responsive element

−671/-664(+)

AT-rich sequence

TAAAATACT

−1419/-1411(+)

1

Element for maximal elicitor-mediated activation (2copies)

TCT-motif

TCTTAC

−1338/-1333(+)

1

Part of a light responsive element

GARE-motif

AAACAGA

−892/-886(−)

1

Gibberellin-responsive element

GAG-motif

AGAGAGT

−286/-280(−)

1

Part of a light responsive element

G-box

CACATGG

−227/-221(−)

1

Cis-acting regulatory element involved in light responsiveness

circadian

CAANNNNATC

−156/-146(+)

1

Cis-acting regulatory element involved in circadian control

TATA-box

TATA(T/A)A(T/A)A

−25/-18(+)

1

Core promoter element around −30 of transcription start