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Table 5 Diversity indices for the three 16S rRNA gene clone libraries

From: Comparison of soil bacterial communities in a natural hardwood forest and coniferous plantations in perhumid subtropical low mountains

Index

Hardwood

Calocedrus

Cryptomeria

Sa

87

85

93

Nb

168

168

161

ACE

140

165

266

Richnessc

0.28

0.29

0.42

Shannond

4.21

4.20

4.24

Chao1

138

173

258

95% COIe

112-193

126-271

174-427

  1. Calculations were based on operational taxonomic units formed at an evolutionary distance of <0.03 (or ~97% similarity).
  2. aS, number of operational taxonomic units observed.
  3. bN, number of sequences.
  4. cRichness = (number of singleton OTUs-1)/logN. The maximum value is (N-1)/logN. The observed/maximum possible value is reported.
  5. dShannon diversity index (H).
  6. e95% confidence interval for Chao1 estimator.