Phellinus noxius: molecular diversity among isolates from Taiwan and its phylogenetic relationship with other species of Phellinus based on sequences of the ITS region

Tsai, Jyh-Nong; Ann, Pao-Jen; Liou, Ruey-Fen; Hsieh, Wen-Hsui; Ko, Wen-Hsiung

doi:10.1186/s40529-017-0162-1

Botanical Studies

Table 1 List of taxa of Phellinus noxius and related species from GenBank used for phylogenetic analysis

From: Phellinus noxius: molecular diversity among isolates from Taiwan and its phylogenetic relationship with other species of Phellinus based on sequences of the ITS region

Species	Geographic origin^a	Strain no.^b	ITS sequence length (bp)^c	Accession no.
1. Phellinus alni		TW322	610	AY340041
2. P. badius		CBS 449.76	663	AY558609
3. P. baumii		MPNU 7006	711	AF200231
4. P. bicuspidatus		KCTC 6651	621	AY558610
5. P. calcitratus			584	JF894115
6. P. chrysoloma			644	AF055370
7. P. cinereus		05-37	620	AM931248
8. P. conchatus		CBS 167.29	708	AY558614
9. P. ferrugineovelutinus		CBS 218.48	542	AY558618
10. P. gilvus		ATCC26729	613	AF250932
11. P. hartigii		CBS 162.30	692	AY558621
12. P. h ippophaeicola		CBS 252.50	705	AY558622
13. P. igniarius		CFMR 5698	609	AY558623
P. igniarius		KCTC6228	598	AF056192
14. P. igniarius var. trivialis		CBS 512.63	596	AY558624
15. P. johnsonianus		ATCC60051	702	AF250931
16. P. laevigatus		CFMR 5640	588	AY558626
17. P. linteus		MPNU 7002	670	AF200228
18. P. lundellii		CBS 540.72	605	AY558630
19. P. merrillii		PM950703-1	707	EU035310
20. P. nigricans		CBS 213.48	611	AY558631
P. nigricans		H6002112	621	GQ383726
21. P. noxius	Taiwan	PN72.1	613-L	JQ003239
P. noxius	Taiwan	PNP1.2	609-M	JN836341
P. noxius	Taiwan	PN29.1	609-M	JN836344
P. noxius	Taiwan	PNA4.1	609-M	JN836346
P. noxius	Taiwan	PN5.2	608-M	JQ003233
P. noxius	Taiwan	PNP4.2	607-M	JQ029276
P. noxius	Taiwan	PN22.1	601-S	EF065630
P. noxius		CBS170.32	601-S	EF065631
P. noxius,	Japan	Tf566	601-S	JQ003238
P. noxius	Malaysia	FRIM638	610-M	HQ400698
P. noxius	Malaysia	FRIM618	602-S	HQ400699
P. noxius	Malaysia	FRIM613	602-S	HQ400700
P. noxius	Malaysia	FRIM551	603-S	HQ400702
P. noxius	Malaysia	FRIM154	601-S	HQ400703
P. noxius	Malaysia	FRIM147	599-S	HQ400704
P. noxius	India	–	608-M	AB639022
22. P. occidentalis		CBS 196.55	706	AY558634
23. P. pachyphloeus = Inonotus pachphloeus		CBS 193.37	571	AY558635
24. P. pini		ATCC12240	635	AF250930
25. P. pini var. cancriformans		IMSNU 32031	636	AF200242
26. P. pomaceus		25	599	FR686572
27. P. populicola		CBS 638.75	599	AY558638
28. P. punctatus		CBS 386.66	649	AY558640
29. P. repandus		CBS 616.89	658	AF534076
30. P. rhabarbarinus		CBS 282.77	714	AY558642
31. P. ribis f. ulicis		CBS 579.50	653	AY558644
32. P. rimosus		MDJCBS86	608	DQ103885
33. P. robustus		KCTC 6657	679	AY558645
34. P. senex		CBS 442.76	578	AY558647
35. P. spiculosus		KTCC 6658	641	AY558648
36. P. tremulae		CBS 123.40	595	AY558650
37. P. tropicalis		CBS 617.89	636	AF534077
38. P. tuberculosus		CBS 171.32	600	AY558652
39. P. weirii		CNU 6017	620	AF251438

^aThe country where P. noxius was isolated
^b CBS Centraalbureau voor Schimmelcultures, NPMU National Programme Management Unit, KCTC Korean Collection for Type Cultures, ATCC American Type Culture Collection, CFMR Colegiul Fizicienilor Medicali din România, FRIM Forest Research Institute Malaysia, IMSNU Institute of Microbiology, Seoul National University, CNU Collection of Newcastle University
^cL: ITS type L; M: ITS type M; S: ITS type S

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