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Table 3 Nucleotide variation in ITS detected among isolates of Phellinus noxius in Taiwan

From: Phellinus noxius: molecular diversity among isolates from Taiwan and its phylogenetic relationship with other species of Phellinus based on sequences of the ITS region

Kind of variant

Sequence position

Nucleotide variation

Single nucleotide polymorphism

Deletion

Insertion

ITS1

    

 V1/V1*

19

G, A/R

  

 V2

31

T, C

  

 V3/V3*

32

G, C/S

  

 V4

114

G, C

  

 V5

116–117

  

GGAGAG

 V6

117–118

TG, AT

  

 V7

125–126

TC, AT

  

 V8/V8*

129

T, A/C

  

 V9

135–142

 

ATTTATTC

 

 V10

152

A, G

  

 V11

168

C, T

  

 V12

193

 

A

 

 V13

197

T, C

  

ITS2

    

 V14/V14*

420

T, C/Y

  

 V15/V15*

442

G, A/R

  

 V16/V16*

469

A, G/R

  

 V17/V17*

546

A, G/R

  

 V18/V18*

593

C, G/S

  

 V19

594–595

 

AC

 

 V20

600–601

  

C

  1. *The variants with an asterisk symbol represent isolates with single nucleotide polymorphisms among chromosomes in the same isolate