Identification of differentially expressed genes in sunflower (Helianthus annuus) leaves and roots under drought stress by RNA sequencing

Liang, Chunbo; Wang, Wenjun; Wang, Jing; Ma, Jun; Li, Cen; Zhou, Fei; Zhang, Shuquan; Yu, Ying; Zhang, Liguo; Li, Weizhong; Huang, Xutang

doi:10.1186/s40529-017-0197-3

Botanical Studies

Table 2 Different expressed genes response to stress

From: Identification of differentially expressed genes in sunflower (Helianthus annuus) leaves and roots under drought stress by RNA sequencing

Gene id	Annotation	Leaf			Root			Response to stress
Gene id	Annotation	PEG-readcount	CK	pval	PEG	CK	pval	Response to stress
Comp11967_c0	Dehydrin-like protein	10,175.3	1617.8	4.44E−08	120.8	1.9	7.27E−05	Water stimulus, chemical stimulus
Comp12003_c1	H. annuus mRNA for dehydrin related protein	5070.93	887.9	1.47E−07				Water stimulus, chemical stimulus
Comp14403_c0	NAC domain-containing protein	358.3	111.8	1.70E−06				Water deprivation, chemical stimulus, hormone stimulus, endogenous stimulus, organic substance
Comp17955_c0	Indole-3-acetic acid amido synthetase activity	33.43	5.4	1.64E−05				Hormone stimulus, endogenous stimulus, organic substance, chemical stimulus, radiation
Comp21257_c0	S-Adenosylmethionine synthetase	712.53	116.3	2.27E−14				Cold, temperature stimulus
Comp22725_c0	Galactinol synthase 2	31.43	6.9	0.0004				Abscisic acid stimulus, cold, oxidative stress, water deprivation, salt stress
Comp25287_c0	Aldehyde dehydrogenase family 7 member A1	2745.1	525.1	5.97E−13				Endogenous stimulus, salt, chemical stimulus, water stimulus, osmotic stress, organic substance, desiccation
Comp26183_c0	CBL-interacting serine/threonine-protein kinase	587.5	226.9	3.16E−05				Osmotic stress, salt, chemical stimulus, water stimulus,
Comp30219_c0	Glycosyl transferase family	1270.1	363.5	8.76E−08				Endogenous stimulus, salt, oxidative stress, chemical stimulus, temperature stimulus, water stimulus, organic substance, cold, osmotic stress
Comp305249_c0	DNA binding	0.3	10.6	0.0258				Radiation
Comp31776_c0	ATP-dependent Clp protease ATP-binding subunit ClpB	755.1	289.3	3.34E−05				Hydrogen peroxide, oxidative stress, chemical stimulus, temperature, light stimulus, reactive oxygen species, radiation
Comp32945_c0	Galactinol synthase 3	1420.8	461.4	0.0004				Chemical stimulus, water deprivation, temperature stimulus, cold
Comp34774_c0	Dehydrin	82412.6	5573.7	9.12E−29				Chemical stimulus, water stimulus
Comp35427_c0	Calcium-binding protein CML	1744.4	383.7	0.0003				Organic substance, endogenous stimulus, hormone stimulus, chemical stimulus, temperature stimulus, radiation
Comp36183_c0	Root phototropism protein 2	1014.1	2130.7	0.0455				Radiation
Comp39610_c0	Protein serine/threonine kinase activity	262.8	59.8	1.45E−08				Osmotic stress, endogenous stimulus, hormone stimulus, chemical stimulus, temperature stimulus, radiation
Comp42687_c0	DNAJ heat shock protein-like protein	216.9	66.0	2.04E−05				Hydrogen peroxide, oxidative stress, chemical stimulus, temperature stimulus, high light intensity, reactive oxygen species, heat, radiation

Gene id represent the sub-component serial number obtained by Trinity stitching

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