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Table 4 Distribution of SSR loci in H. erinaceus HT-4903, GT-06, CC-02, PZH-05, TJH-03 and TD-04 transcriptome

From: Comparative transcriptome analysis reveals the genetic basis underlying the biosynthesis of polysaccharides in Hericium erinaceus

SSR type

Sample

HT-4903

GT-06

CC-02

PZH-05

TJH-03

TD-04

Mono-nucleotide

2715 (68.28%)

5407 (80.89%)

2811 (69.27%)

3331 (81.44%)

4014 (82.47%)

4495 (78.92%)

Di-nucleotide

157 (3.95%)

192 (2.87%)

178 (4.39%)

236 (5.77%)

175 (3.60%)

214 (3.76%)

Tri-nucleotide

1008 (25.35%)

992 (14.84%)

984 (24.24%)

488 (11.93%)

657 (13.50%)

898 (15.77%)

Quad-nucleotide

64 (1.61%)

68 (1.01%)

54 (1.33%)

22 (0.54%)

8 (0.16%)

62 (1.09%)

Penta-nucleotide

12 (0.3%)

9 (0.13%)

13 (0.32%)

11 (0.27%)

2 (0.04%)

6 (0.11%)

Hexa-nucleotide

20 (0.5%)

16 (0.23%)

18 (0.44%)

2 (0.05%)

11 (0.22%)

21 (0.37%)

Total

3976

6684

4058

4090

4867

5696