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Table 4 Distribution of SSR loci in H. erinaceus HT-4903, GT-06, CC-02, PZH-05, TJH-03 and TD-04 transcriptome

From: Comparative transcriptome analysis reveals the genetic basis underlying the biosynthesis of polysaccharides in Hericium erinaceus

SSR typeSample
HT-4903GT-06CC-02PZH-05TJH-03TD-04
Mono-nucleotide2715 (68.28%)5407 (80.89%)2811 (69.27%)3331 (81.44%)4014 (82.47%)4495 (78.92%)
Di-nucleotide157 (3.95%)192 (2.87%)178 (4.39%)236 (5.77%)175 (3.60%)214 (3.76%)
Tri-nucleotide1008 (25.35%)992 (14.84%)984 (24.24%)488 (11.93%)657 (13.50%)898 (15.77%)
Quad-nucleotide64 (1.61%)68 (1.01%)54 (1.33%)22 (0.54%)8 (0.16%)62 (1.09%)
Penta-nucleotide12 (0.3%)9 (0.13%)13 (0.32%)11 (0.27%)2 (0.04%)6 (0.11%)
Hexa-nucleotide20 (0.5%)16 (0.23%)18 (0.44%)2 (0.05%)11 (0.22%)21 (0.37%)
Total397666844058409048675696