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Table 3 Details of 25 potentially polymorphic microsatellite repeats in five species of Senecio

From: Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics

Microsatellites Senecio schweinfurthii S. keniophytum S. moorei S. purtschelleri S. roseiflorus Location
Start End Start End Start End Start End Start End
(AAAT)3;(ATT)4 1849 1860 1881 1892 1860 1871 1848 1859 1881 1892 Intron
(T)10,11;(T)16n(TTAGA)3 8685 8694 9134 9180 8697 8706 8689 8699 8317 8326 IGS
(T)10;(A)10;(A)10tca(T)10 9738 9747 9720 9729 9738 9760 9731 9754 9695 9704 IGS
(T)17,10,16, 10,859 10,875 10,857 10,866 10,872 10,887 10,866 10,881 10,852 10,861 IGS
(T)11,23,16 12,933 12,943 12,919 12,941 12,945 12,955 12,919 12,929 12,925 12,940 IGS
(T)16,16,15 16,878 16,893 18,219 18,228 16,890 16,905 16,864 16,878 16,875 16,884 Intron
(AT)6;(A)10(TA)6 26,849 26,860 26,787 26,798 26,861 26,872 26,834 26,845 26,776 26,797 IGS
(T)10 g(A)11;(T)10c(A)10;(A)14 28,219 28,240 28,166 28179 28,231 28,252 28,204 28,225 28,154 28,174 IGS
(ATAAA)3;(T)10;(CTA)5 32,007 32,021 30,007 30,016 32,019 32,033 31,992 32,006 31,008 31,022 IGS
(AT)5,7;9 34,922 34,931 34,890 34,916 34,934 34,943 34,907 34,916 34,879 34,892 IGS
(A)11;(T)14 41,864 41,874 41,844 41,857 41,876 41,886 41,849 41,858 41,840 41,849 IGS
(A)17,14,20 46,644 46,660 46,666 46,679 46,656 46,672 46,629 46,645 46,621 46,640 IGS
(T)10,11,12;(A)10n(T)11 48,099 48,109 48,125 48,136 48,111 48,120 48,084 48,093 48,063 48,103 IGS
(A)11.12 59,324 59,334 59,388 59,398 59,335 59,346 59,308 59,318 59,021 59031 IGS
(A)12 64,609 64,620 64,721 64,732 64,621 64,632 64,593 64,605 64,658 64,668 IGS
(A)10;(ATTT)3n;(A)11n(A)11 70,356 70,365 70,409 70,428 70,368 70,377 70,343 70,352 70,266 70,407 Intron
(T)14,13,12 70,577 70,590 70,699 70,710 70,589 70,601 70,564 70,577 70,619 70,630 Intron
(A)11,12,14 76,913 76,923 77,044 77,055 76,925 76,935 76,900 76,910 76,964 76,977 IGS
(T)10,17 77,160 77,169 77,292 77,308 77,172 77,181 77,147 77,156 77,215 77,231 CDS
(T)14n(T)16,17;(T)10 79,597 79,716 79,745 79,754 79,609 79,728 79,584 79,704 79,668 79,677 IGS
(A)14,17 80,181 80,194 80,303 80,319 80,193 80,206 80,169 80,182 80,221 80,237 IGS
(A)10,11,15 108,867 108,877 109,796 109,805 108,880 108,890 108,855 108,865 109,680 109,694 CDS
(A)12,16 110,440 110,451 110,599 110,614 110,453 110,464 110,428 110,439 110,483 110,494 CDS
(GATT)3;(GATT)3n(TAAT)3 115,162 115,173 115,324 115,409 115,174 115,185 115,149 115,160 115,206 115,291 Intron
(AT)5,6 115,559 115,570 115,973 115,982 115,571 115,582 115,546 115,557 115,947 115,957 Intron
  1. n = varying number of base pairs between two repeat motifs