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Table 3 Details of 25 potentially polymorphic microsatellite repeats in five species of Senecio

From: Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics

Microsatellites

Senecio schweinfurthii

S. keniophytum

S. moorei

S. purtschelleri

S. roseiflorus

Location

Start

End

Start

End

Start

End

Start

End

Start

End

(AAAT)3;(ATT)4

1849

1860

1881

1892

1860

1871

1848

1859

1881

1892

Intron

(T)10,11;(T)16n(TTAGA)3

8685

8694

9134

9180

8697

8706

8689

8699

8317

8326

IGS

(T)10;(A)10;(A)10tca(T)10

9738

9747

9720

9729

9738

9760

9731

9754

9695

9704

IGS

(T)17,10,16,

10,859

10,875

10,857

10,866

10,872

10,887

10,866

10,881

10,852

10,861

IGS

(T)11,23,16

12,933

12,943

12,919

12,941

12,945

12,955

12,919

12,929

12,925

12,940

IGS

(T)16,16,15

16,878

16,893

18,219

18,228

16,890

16,905

16,864

16,878

16,875

16,884

Intron

(AT)6;(A)10(TA)6

26,849

26,860

26,787

26,798

26,861

26,872

26,834

26,845

26,776

26,797

IGS

(T)10 g(A)11;(T)10c(A)10;(A)14

28,219

28,240

28,166

28179

28,231

28,252

28,204

28,225

28,154

28,174

IGS

(ATAAA)3;(T)10;(CTA)5

32,007

32,021

30,007

30,016

32,019

32,033

31,992

32,006

31,008

31,022

IGS

(AT)5,7;9

34,922

34,931

34,890

34,916

34,934

34,943

34,907

34,916

34,879

34,892

IGS

(A)11;(T)14

41,864

41,874

41,844

41,857

41,876

41,886

41,849

41,858

41,840

41,849

IGS

(A)17,14,20

46,644

46,660

46,666

46,679

46,656

46,672

46,629

46,645

46,621

46,640

IGS

(T)10,11,12;(A)10n(T)11

48,099

48,109

48,125

48,136

48,111

48,120

48,084

48,093

48,063

48,103

IGS

(A)11.12

59,324

59,334

59,388

59,398

59,335

59,346

59,308

59,318

59,021

59031

IGS

(A)12

64,609

64,620

64,721

64,732

64,621

64,632

64,593

64,605

64,658

64,668

IGS

(A)10;(ATTT)3n;(A)11n(A)11

70,356

70,365

70,409

70,428

70,368

70,377

70,343

70,352

70,266

70,407

Intron

(T)14,13,12

70,577

70,590

70,699

70,710

70,589

70,601

70,564

70,577

70,619

70,630

Intron

(A)11,12,14

76,913

76,923

77,044

77,055

76,925

76,935

76,900

76,910

76,964

76,977

IGS

(T)10,17

77,160

77,169

77,292

77,308

77,172

77,181

77,147

77,156

77,215

77,231

CDS

(T)14n(T)16,17;(T)10

79,597

79,716

79,745

79,754

79,609

79,728

79,584

79,704

79,668

79,677

IGS

(A)14,17

80,181

80,194

80,303

80,319

80,193

80,206

80,169

80,182

80,221

80,237

IGS

(A)10,11,15

108,867

108,877

109,796

109,805

108,880

108,890

108,855

108,865

109,680

109,694

CDS

(A)12,16

110,440

110,451

110,599

110,614

110,453

110,464

110,428

110,439

110,483

110,494

CDS

(GATT)3;(GATT)3n(TAAT)3

115,162

115,173

115,324

115,409

115,174

115,185

115,149

115,160

115,206

115,291

Intron

(AT)5,6

115,559

115,570

115,973

115,982

115,571

115,582

115,546

115,557

115,947

115,957

Intron

  1. n = varying number of base pairs between two repeat motifs