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Table 3 Details of 25 potentially polymorphic microsatellite repeats in five species of Senecio

From: Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics

MicrosatellitesSenecio schweinfurthiiS. keniophytumS. mooreiS. purtschelleriS. roseiflorusLocation
StartEndStartEndStartEndStartEndStartEnd
(AAAT)3;(ATT)41849186018811892186018711848185918811892Intron
(T)10,11;(T)16n(TTAGA)38685869491349180869787068689869983178326IGS
(T)10;(A)10;(A)10tca(T)109738974797209729973897609731975496959704IGS
(T)17,10,16,10,85910,87510,85710,86610,87210,88710,86610,88110,85210,861IGS
(T)11,23,1612,93312,94312,91912,94112,94512,95512,91912,92912,92512,940IGS
(T)16,16,1516,87816,89318,21918,22816,89016,90516,86416,87816,87516,884Intron
(AT)6;(A)10(TA)626,84926,86026,78726,79826,86126,87226,83426,84526,77626,797IGS
(T)10 g(A)11;(T)10c(A)10;(A)1428,21928,24028,1662817928,23128,25228,20428,22528,15428,174IGS
(ATAAA)3;(T)10;(CTA)532,00732,02130,00730,01632,01932,03331,99232,00631,00831,022IGS
(AT)5,7;934,92234,93134,89034,91634,93434,94334,90734,91634,87934,892IGS
(A)11;(T)1441,86441,87441,84441,85741,87641,88641,84941,85841,84041,849IGS
(A)17,14,2046,64446,66046,66646,67946,65646,67246,62946,64546,62146,640IGS
(T)10,11,12;(A)10n(T)1148,09948,10948,12548,13648,11148,12048,08448,09348,06348,103IGS
(A)11.1259,32459,33459,38859,39859,33559,34659,30859,31859,02159031IGS
(A)1264,60964,62064,72164,73264,62164,63264,59364,60564,65864,668IGS
(A)10;(ATTT)3n;(A)11n(A)1170,35670,36570,40970,42870,36870,37770,34370,35270,26670,407Intron
(T)14,13,1270,57770,59070,69970,71070,58970,60170,56470,57770,61970,630Intron
(A)11,12,1476,91376,92377,04477,05576,92576,93576,90076,91076,96476,977IGS
(T)10,1777,16077,16977,29277,30877,17277,18177,14777,15677,21577,231CDS
(T)14n(T)16,17;(T)1079,59779,71679,74579,75479,60979,72879,58479,70479,66879,677IGS
(A)14,1780,18180,19480,30380,31980,19380,20680,16980,18280,22180,237IGS
(A)10,11,15108,867108,877109,796109,805108,880108,890108,855108,865109,680109,694CDS
(A)12,16110,440110,451110,599110,614110,453110,464110,428110,439110,483110,494CDS
(GATT)3;(GATT)3n(TAAT)3115,162115,173115,324115,409115,174115,185115,149115,160115,206115,291Intron
(AT)5,6115,559115,570115,973115,982115,571115,582115,546115,557115,947115,957Intron
  1. n = varying number of base pairs between two repeat motifs