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Table 2 Genetic diversity and demographic characteristic of Begonia luzhaiensis based on EST-SSR markers and trnC-ycf6 spacer sequence

From: Phylogeography of Begonia luzhaiensis suggests both natural and anthropogenic causes for the marked population genetic structure

Population code

n (SSR/cpDNA)

SSR

cpDNA

Ar

Hs

Fis

Ho

He

Ï€

h

θw

Haplotype (n)

East Guangxi

 Fuli (FL)

9/5

1.552

0.553

0.039

0.531

0.518

0.000

0.000

0.000

H2 (5)

 Gaotian (GT)

5/5

1.478

0.472

-0.106

0.522

0.429

0.000

0.000

0.000

H4 (5)

 Lingui (LG)

6/5

1.371

0.383

0.228

0.296

0.336

0.171

0.600

0.137

H3 (2), H5 (3)

 Xingping (XP)

13/9

1.266

0.266

0.080

0.245

0.255

0.000

0.000

0.000

H1 (9)

 Yongfu (YF)

18/6

1.261

0.264

0.212

0.208

0.251

0.000

0.000

0.000

H3 (6)

 Yangshuo (YS)

15/13

1.475

0.476

0.073

0.441

0.459

0.000

0.000

0.000

H2 (13)

Central Guangxi

 Luzhai (LZ)

20/12

1.482

0.487

0.187

0.396

0.455

0.000

0.000

0.000

H6 (12)

 Rongshui (RS)

15/14

1.326

0.328

0.142

0.282

0.313

0.000

0.000

0.000

H7 (14)

West Guangxi

 Bama (BM)

1/1

–

–

–

–

–

0.000

0.000

0.000

H8 (1)

 Donglan (DL)

1/2

–

–

–

–

–

0.142

1.000

0.142

H6 (1), H9 (1)

 Fengshan (FS)

1/1

–

–

–

–

–

0.000

0.000

0.000

H9 (1)

 Lingyun (LY)

35/35

1.236

0.237

0.201

0.189

0.232

0.000

0.000

0.000

H8 (35)

 Paoli (PL)

2/2

1.073

0.067

-0.500

0.094

0.055

0.000

0.000

0.000

H9 (2)

 Tian’e (TE)

4/3

1.245

0.266

0.569

0.115

0.212

0.000

0.000

0.000

H8 (3)

 Xincheng (XC)

20/18

1.294

0.295

0.101

0.265

0.285

0.000

0.000

0.000

H6 (18)

 Yizhou (YZ)

-/1

–

–

–

–

–

0.000

0.000

0.000

H6 (1)

  1. n (SSR/cpDNA), number of individuals sampled for SSR/cpDNA; AR: mean allelic richness corrected for sample size; HS: gene diversity; FIS: inbreeding coefficient; HO: observed heterozygosity; HE: expected heterozygosity; π: nucleotide diversity; h: haplotype diversity