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Table 7 The result of nested clade phylogeographic analysis of Begonia luzhaiensis based on trnC-ycf6 haplotypes

From: Phylogeography of Begonia luzhaiensis suggests both natural and anthropogenic causes for the marked population genetic structure

Clade

Significant clades and I-T

Significant parameter

Phylogeographic inferences

1-1

H8 (I)

H9 (T)

I-T

Dc> ; Dn>

Dc> ; Dn>

1 → 2→3 → 4→No: Restricted gene flow with isolation by distance

1-2

H6 (I)

H7 (T)

I-T

Dn>

Dc< ; Dn<

Dc> ; Dn>

1 → 19 → No: Allopatric fragmentation

1-3

H2 (I)

H3 (I)

H4 (T)

Dc< ; Dn<

Dc< ; Dn>

Dc<

1 → 19 → No: Allopatric fragmentation

2-1

1-1 (T)

1-2 (I)

I-T

Dc< ; Dn<

Dc< ; Dn>

Dc> ; Dn>

1 → 2→3 → 5→15 → No → 21 → No: past gradual range expansion followed by fragmentation or a past larger range followed by extinction in intermediate areas

2-2

1-3 (I)

1-4 (T)

1-5 (T)

I-T

Dn>

Dc< ; Dn<

Dc>

1 → 2→3 → 5→15 → No → 21 → No: past gradual range expansion followed by fragmentation or a past larger range followed by extinction in intermediate areas

Total

2-1 (T)

2-2 (T)

Dc< ; Dn<

Dc< ; Dn>

1 → 19 → No: Allopatric fragmentation

  1. Phylogeographic inferences are inferred by applying the inference key of Posada et al. (2000) (http://darwin.uvigo.es/software/geodis.html)
  2. (T): tip; (I): interior; Dc: clade distance; Dn: nested clade distance; I-T: interior vs. tip clades