Table 3 Pi-ta alleles of blast susceptible and resistant cultivars at the same SNP position

Nipponbare

Susceptible (Wang et al. 2008)

0

A

C

G

C

Nanjing 11

Susceptible (Wang et al. 2008)

16

T

G

C

A

M202

Susceptible (Wang et al. 2008)

8.5

none

C/G

G/C

C/A

Cica 9

Susceptible (Jia et al. 2003)

11

T

G

C

C

Katy

Resistant (Jia et al. 2003)(Wang et al. 2008)

26

T

G

C

A

Drew

Resistant (Jia et al. 2003)

26

T

G

C

A

Tetep

Resistant (Wang et al. 2019b)

-

T

G

C

A

TN1

Susceptible

17

T

G

C

A

Haplotype

 Haplotype 1

–

A

C

G

C

 Haplotype 2

–

T

G

C

C

 Haplotype 3

–

T

G

C

C

 Haplotype 4

–

T

G

C

A

Major/minor allele and MAF

 Major allele

–

T

G

C

C

 Minor allele

–

A

C

G

A

 Minor allele frequency (MAF)

–

21.05%

20.99%

20.99%

36.56%