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Table 1 A list of 95 differential redox proteins in BvM14 roots between control and NaCl-treated groups

From: Quantitative redox proteomics revealed molecular mechanisms of salt tolerance in the roots of sugar beet monomeric addition line M14

No. Protein IDa Description Abbreviation Sequence with modificationb Plant species iodoTMT salt200/control ratioc iodoTMT salt400/control ratiod p-value Protein locatione
Metabolism
Carbohydrate metabolism
1 A0A2H5P1K5 6-Phosphogluconate dehydrogenase, decarboxylating PGDH IC2SYAQGMNILR Citrus unshiu 1.38 0.05 Chloroplast
2 731322678 Beta-fructofuranosidase, soluble isoenzyme I β-FFase NWFC4TDQSR Beta vulgaris subsp. vulgaris 0.76 0.03 Vacuole
3 Q41140 Pyrophosphate–fructose 6-phosphate 1-phosphotransferase subunit alpha PFP1 SLYKPELPPC10LQGTTVR Ricinus communis 0.74 0.03 Cytoplasm
4 1108966238 Sucrose synthase isoform X2 SUS LLPDAVGTTC10GQR Beta vulgaris subsp. vulgaris 0.64 0.05 Chloroplast
5 731323052 Probable fructokinase-4 FRK LLLVTLGDQGC11R Beta vulgaris subsp. vulgaris 0.75 0.04 Cytoplasm
6 A0A0S3T1M9 UDP-glucose 6-dehydrogenase UGDH VFDC4MQKPAFVFDGR Vigna angularis var. angularis 1.30 0.02 Cytoplasm
7 731364471 Trypsin inhibitor BvTI TI NPELPC6PYYITR Beta vulgaris subsp. vulgaris 0.30 0.04 Extracellular
8 731344067 Kunitz trypsin inhibitor 1-like KTI C1PYYSVVQSQDDR Beta vulgaris subsp. vulgaris 1.50 0.01 Vacuole
9 731331165 Alpha-amylase/trypsin inhibitor α-TI ANGGC5NNAYNYSYSR Beta vulgaris subsp. vulgaris 0.52 0.49 0.01 Extracellular
Amino acid metabolism
10 731353768 Aspartate aminotransferase AST VASAQC6LSGTGSLR Beta vulgaris subsp. vulgaris 1.20 0.03 Cytoplasm
11 A0A2P5X5J0 Aspartate aminotransferase AST IAAVQALSGTGAC13R Gossypium barbadense 1.26 0.04 Cytoplasm
12 731351009 Aspartic proteinase A1-like AP VGEGPAAQC9ISGFTALDVPPPR Beta vulgaris subsp. vulgaris 1.35 0.02 Vacuole
13 731353609 3-Hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 H2BCH C1VLIESSSPR Beta vulgaris subsp. vulgaris 1.21 0.01 Mitochondrial
14 A0A2I0XB93 Aspartate-semialdehyde dehydrogenase ASDH IRQDLSQEGNHGLDIFVC18GDQIR Dendrobium catenatum 1.41 0.02 Cytoplasm
15 A0A0M3TGF7 Acetolactate synthase ALS C1GISDVFAYPGGASMEIHQALTR Poa annua 1.33 0.03 Chloroplast
16 731325199 Serine hydroxymethyl transferase 4 SHMT MLIC4GGSAYPR Beta vulgaris subsp. vulgaris 0.59 0.04 Cytoplasm
17 731317741 LL-diaminopimelate aminotransferase, chloroplastic DAPL TELIFFC7SPNNPTGAAATR Beta vulgaris subsp. vulgaris 0.80 0.05 Chloroplast
18 A0A0K9RN52 Glutamate-1-semialdehyde 2,1-aminomutase GSAM FVNSGTEAC9MGVLR Spinacia oleracea 1.21 0.00 Chloroplast
Other metabolism
19 A0A0B2RAS0 Proteasome subunit alpha type-5 PSAM5 FSYGEPMTVESTTQAIC17DLALR Glycine soja 0.76 0.05 Nucleus
20 731363918 Proteasome subunit alpha type-5 PSAM5 FSYGEPMTVESTTQALC17DLALR Beta vulgaris subsp. vulgaris 1.24 0.00 Nucleus
21 731361751 Proteasome subunit alpha type-5 PSAM5 FSYGEPMNVESTTQALC17DLALR Beta vulgaris subsp. vulgaris 1.46 0.03 Nucleus
22 A0A287HDI6 Proteasome subunit beta type-6 PSAM6 QLTDNVYVC9R Hordeum vulgare subsp. vulgare 1.23 1.57 0.05 Nucleus
23 M0UCJ4 ATP synthase subunit beta ATPsny VC2QVIGAVVDVR Musa acuminata subsp. malaccensis 0.74 0.04 Mitochondrion
24 M8C108 ATP synthase subunit alpha, mitochondrial ATPsny MTNFC5TNFQVDEIGR Aegilops tauschii 1.76 0.01 Mitochondrial
ROS homeostasis
25 A0A287X935 Peroxidase POD ASVEAVC7PGVVSC13ADILAITAR Hordeum vulgare subsp. vulgare 2.13 0.01 Extracellular
26 A0A2G9HTZ9 Peroxidase POD QAVEAQC7PGVVSC13SDILAIAAR Handroanthus impetiginosus 2.05 0.01 Extracellular
27 A0A1S2YYJ3 Peroxidase POD SDLENAC7PSTVSC13ADILTLAAR Cicer arietinum 1.70 0.01 Extracellular
28 A0A2G2WVY9 Peroxidase POD IKTMC5PGAAVSC12ADILALAAR Capsicum baccatum 0.46 0.05 Extracellular
29 J3L3F3 Peroxidase POD LEAAC5PKTVSC11ADILALAAR Oryza brachyantha 1.65 0.01 Extracellular
30 A0A0J8CS88 Peroxidase POD QC2PAGNAGANIVVPMDPISPTISDTAYYR Beta vulgaris subsp. vulgaris 1.50 0.04 Extracellular
31 731316487 Peroxidase 4 POD4 TC2PQLFPTIR Beta vulgaris subsp. vulgaris 0.56 0.01 Extracellular
32 731313635 Peroxidase 12 POD12 VVSC4ADITSLAAR Beta vulgaris subsp. vulgaris 0.42 0.05 Extracellular
33 731313633 Peroxidase 12 POD12 VVSC4ADITTLAAR Beta vulgaris subsp. vulgaris 0.69 0.04 Extracellular
34 731313639 Peroxidase 12 POD12 VVSC4ADLTALAAR Beta vulgaris subsp. vulgaris 0.64 0.03 Vacuole
35 A0A0A9MG34 Peroxidase 72 POD72 AALEAAC7PSTVSC13ADILALTAR Arundo donax 1.55 0.05 Extracellular
36 731337443 Peroxidase 72 POD72 AAVEQAC7PHTVSC13ADILALTAR Beta vulgaris subsp. vulgaris 2.32 0.03 Extracellular
37 731331163 Protein P21 P21 TDNYC5C6NSGSC11GPTDYSR Beta vulgaris subsp. vulgaris 4.09 1.44 0.02 Extracellular
38 A0A1S3TTL2 DSBA domain-containing protein DSBA NVGLEYC7MSGLTGNTIDSHR Vigna radiata var. radiata 0.55 1.63 0.04 Chloroplast
39 731339890 EG45-like domain containing protein 2 EG45 VTDLC5DSC8AGDLNLSQEAFNVIADTR Beta vulgaris subsp. vulgaris 0.44 0.00 Extracellular
40 731352762 EG45-like domain containing protein EG45 VTC3VSGTNQGVPQPC15R Beta vulgaris subsp. vulgaris 1.32 0.04 Extracellular
41 A0A0J8B2W2 Fe2OG dioxygenase domain-containing protein Fe2OG VAIYPEC7PNPELVR Beta vulgaris subsp. vulgaris 0.59 0.02 Cytoplasm
42 M0RV51 Glutathione S-transferase DHAR2 GST AAVGAPDVLGDC12PFSQR Musa acuminata subsp. malaccensis 0.64 0.01 Cytoplasm
43 A0A199UJ48 3-Ketoacyl-CoA thiolase 2, peroxisomal HT IELFAQARDC10LLPMGITSENVAHR Ananas comosus 1.45 0.00 Peroxisome
44 731355863 l-Ascorbate oxidase-like AOX QLGTPWADGTASISQC16PINPGETFTYR Beta vulgaris subsp. vulgaris 0.51 1.58 0.01 Plasma Membrane
45 A0A151QMI1 Nitrate reductase [NADH] 2 NR QSGALHVC8FEGAEDLPGGGGSKYGTSVTR Cajanus cajan 1.54 0.00 Peroxisome
46 731357289 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B NADH C1VFSLLR Beta vulgaris subsp. vulgaris 1.29 0.04 Mitochondrion
47 731359814 Peptide methionine sulfoxide reductase B5-like MSR FDSGC5GWPAFYEGLPGAITR Beta vulgaris subsp. vulgaris 0.75 0.02 Cytoplasm
48 731312054 Cysteine protease RD19A RD19A LVSLSEQQLVDC12DHEC16DPEER Beta vulgaris subsp. vulgaris 1.63 0.04 Vacuole
Stress and defense
49 731330989 Probable polygalacturonase PGs VIDNFEYSAINC12R Beta vulgaris subsp. vulgaris 1.5 0.04 Plasma Membrane
50 731338906 PLAT domain-containing protein 3 PITI GPC3LNAPVC9AMR Beta vulgaris subsp. vulgaris 1.26 0.01 Vacuole
51 A0A166FTZ6 Heat shock cognate 70 kDa protein Hsp70 MDIC4SVHDVVLVGGSTR Daucus carota subsp. sativus 1.21 0.05 Endoplasmic reticulum
52 Q9XFW7 Chitinase FGFC4GSTDAYC11GEGC15R Beta vulgaris subsp. vulgaris 2.05 0.01 Extracellular
53 731352263 Endochitinase EP3 EP3 VGYYTQYC8QQLGVSPGNNLR Beta vulgaris subsp. vulgaris 0.65 0.02 Cell Wall
54 731352251 Endochitinase EP3 EP3 AINGGEC7GGGNTPAVNAR Beta vulgaris subsp. vulgaris 0.45 0.00 Cell Wall
55 731352259 Endochitinase EP3 EP3 LEC3DGGNPATVNAR Beta vulgaris subsp. vulgaris 0.71 0.01 Cell Wall
56 731329194 Pathogenesis-related protein PR-4 PR-4 NQYGWTAFC9GPAGPTGQASC20GR Beta vulgaris subsp. vulgaris 1.64 0.01 Cytoplasm
57 731326017 Jasmonate-induced protein homolog JIP LDASHDESHC10PGAAAR Beta vulgaris subsp. vulgaris 1.33 0.02 Cell wall
58 731332586 Jasmonate-induced protein homolog JIP LENSGNC7SYDVDYETR Beta vulgaris subsp. vulgaris 0.36 0.04 Cell wall
59 731312253 Jasmonate-induced protein homolog JIP C1GPAAEFNNVNWTQVR Beta vulgaris subsp. vulgaris 1.49 0.00 Cell wall
60 A0A2P4NB14 Flavonoid 3′,5′-methyltransferase GIP IESSLLSIGDGITLC15R Quercus suber 1.33 0.02 Cytoplasm
61 731357526 lysM domain-containing GPI-anchored protein 2   STC3AYVGYNR Beta vulgaris subsp. vulgaris 0.53 0.01 Plasma Membrane
Transport
62 A0A0K9RCQ9 Purple acid phosphatase PAP FLEEC5LASANR Spinacia oleracea 0.40 0.03 Extracellular
63 731352863 Probable inactive purple acid phosphatase 29 PAP QEEVIC6PGVNSGFFDTMR Beta vulgaris subsp. vulgaris 0.68 0.75 0.01 Extracellular
64 731320622 Importin subunit alpha IMP NATWTLSNFC10R Beta vulgaris subsp. vulgaris 1.21 0.03 Nucleus
65 A0A061E090 Vaculolar sorting receptor 3 isoform 1 VSR VC2EC4PLVDGVQFR Theobroma cacao 0.70 0.02 Golgi apparatus
66 731352092 Vacuolar-sorting receptor 4 VSR YC2APDPEQDFSR Beta vulgaris subsp. vulgaris 0.61 0.02 Golgi apparatus
67 A0A2N9HVW5 Mitochondrial import receptor subunit TOM40-1-like protein TOM40 EEEKVDYFNLPC12PIPYEEIHR Fagus sylvatica 1.81 0.02 Mitochondrion
Cellular structure
68 731336429 Actin-depolymerizing factor ADP TGTPAESYDDFLAVLPGNDC20R Beta vulgaris subsp. vulgaris 0.76 0.01 Extracellular
69 731320854 Actin-depolymerizing factor ADP TGGPAESYDDFLASLPESDC20R Beta vulgaris subsp. vulgaris 0.76 0.02 Extracellular
70 731375712 Basic 7S globulin Bg7s TIAPFNVC8VDPSTFPASR Beta vulgaris subsp. vulgaris 10.20 5.10 0.04 Plasma Membrane
71 731317399 Profilin-3 Pfn TGQALVIGLYDEPVTPGQC19NMIVER Beta vulgaris subsp. vulgaris 1.29 0.03 Cytoplasm
72 A4GDT3 Profilin-1 Pfn TGQALVFGIYEESVTPGQC19NMVVER Olea europaea 1.53 0.01 Cytoplasm
73 731354018 Profilin Pfn TGQALVFGIYDEPVAPGQC19NMVVER Beta vulgaris subsp. vulgaris 1.40 0.03 Cytoplasm
Signal transduction
74 731337809 Protein TAPETUM DETERMINANT 1 TPD C1LGFSTVQPVNPR Beta vulgaris subsp. vulgaris 1.50 0.01 Plasma Membrane
75 731357482 Ubiquitin domain-containing protein DSK2b DSK2b SLVAQNC7DVPAEQQR Beta vulgaris subsp. vulgaris 0.74 0.05 Nucleus
76 A0A287MC57 Ubiquitin-like domain-containing protein Uds LMNAYC6DR Hordeum vulgare subsp. vulgare 0.80 0.00 Nucleus
77 731354496 Ribosome-inactivating protein PD-L1/PD-L2 Ubls NQVEAPIRIC10GLPSTR Beta vulgaris subsp. vulgaris 2.04 0.01 Cytoplasm
78 731345483 Auxin-binding protein ABP19a ABP GPEGYAC7RDPATLTTDDFVYTGFR Beta vulgaris subsp. vulgaris 0.42 0.02 Cell wall
79 A0A2K1KH59 Protein kinase domain-containing protein AMPK C1IPYLTR Physcomitrium patens 0.76 0.04 Cytoplasm
80 731370564 Receptor-like serine/threonine-protein kinase SD1-8 isoform X1 RIPK TAFVNDGLNLDQC13R Beta vulgaris subsp. vulgaris 0.70 0.01 Plasma Membrane
81 731348205 Cell wall/vacuolar inhibitor of fructosidase 1 C/VIF1 FGEQAMVDAGNEAEGC16R Beta vulgaris subsp. vulgaris 1.43 0.02 Vacuole
Transcription
82 731323512 Transcription elongation factor TFIIS TFIIS IC2NLTAEEMASEQR Beta vulgaris subsp. vulgaris 0.62 0.02 Nucleus
83 731358684 Glycine-rich RNA-binding protein RBP C1FVGGLAWATDDR Beta vulgaris subsp. vulgaris 0.72 0.01 Cytoplasm
84 731363127 KH domain-containing protein KHP IGETVPGC8DER Beta vulgaris subsp. vulgaris 0.76 0.03 Nucleus
85 731317968 RNA-binding KH domain-containing protein PEPPER RBP VSGVGDVEGSADAAAYC17SIR Beta vulgaris subsp. vulgaris 1.24 0.04 Nucleus
86 A0A1D1Z0S0 U6 snRNA-associated Sm-like protein LSm7 SLGLIVC7R Anthurium amnicola 1.26 0.00 Nucleus
87 A0A0C9S8X9 Transcribed RNA sequence C1GNVNFSFR Wollemia nobilis 1.72 0.01 Cytoplasm
Biosynthesis
88 A0A0J8C157 Eukaryotic translation initiation factor 6 eIF6 NC2LPDSVVVQR Beta vulgaris subsp. vulgaris 0.72 0.02 Nucleus
89 731369461 Eukaryotic translation initiation factor 3 subunit D eIF3 C1ELQSALDINNQR Beta vulgaris subsp. vulgaris 1.27 0.03 Cytoplasm
90 1108926884 Elongation factor Tu, chloroplastic EF-TU MEVELIHPVAC11EEGMR Beta vulgaris subsp. vulgaris 0.80 0.03 Cytoplasm
Photosynthesis
91 731341540 Uclacyanin-3-like AQNYVATAVQPC12C13QGISDAINNER Beta vulgaris subsp. vulgaris 0.64 0.00 Plasma Membrane
92 731349464 Ferredoxin, root R-B1 Fd LIGPDGQVSEFDAPDDC17YILDSAENEGVEIPYSC34R Beta vulgaris subsp. vulgaris 0.61 0.02 Chloroplast
Unknown
93 M1DDJ2 Uncharacterized protein QSHMSLSFSILITELC16QR Solanum tuberosum 1.63 0.00 Cytoplasm
94 B9T2R9 Clp R domain-containing protein CLP INSC4ISIEPSLR Ricinus communis 1.24 0.01 Cytoplasm
95 M8AU58 Uncharacterized protein MTPTTLAC8IGAAAETALPPTHPLR Aegilops tauschii 1.53 0.04 Cytoplasm
  1. aProtein ID, gi number of NCBI
  2. bSequence with modification, the lower case letter are phosphorylation site in each peptide
  3. ciodoTMT salt200/control Ratio, a relative abundance of proteins at redox peptide level (200 mM NaCl treatment versus control), P-value < 0.05
  4. diodoTMT salt400/control Ratio, a relative abundance of proteins at redox peptide level (400 mM NaCl treatment versus control), P-value < 0.05
  5. eProtein location, refer to subcellular location prediction website (YLoc, LocTree3, ngLOC, TargetP)