Sample | Raw reads | Clean reads | Tatal Mapped | Multiple mapped | Q30 | GC content |
---|---|---|---|---|---|---|
FI1 FI2 FI3 | 44,582,118 42,945,294 43,894,564 | 43,627,860 41,428,602 42,428,512 | 40,657,844 (93.19%) 38,887,172(93.87%) 39,982,225 (94.23%) | 1,175,032 (2.69%) 1,230,258 (2.97%) 1,182,543 (2.87%) | 94.34% 94.56% 94.88% | 48.23% 49.57% 48.96% |
LI1 LI2 LI3 | 42,635,092 42,281,372 42,123,265 | 41,560,670 40,330,888 40,930,555 | 38,993,816 (93.82%) 37,712,828 (93.51%) 37,899,887 (92.60%) | 1,124,250 (2.71%) 1,171,920 (2.91%) 1,162,547 (2.85%) | 94.37% 94.61% 94.12% | 48.58% 47.64% 48.21% |
LN1 LN2 LN3 | 51,254,400 45,530,676 47,165,454 | 50,189,780 44,569,834 46,655,888 | 47,096,494 (93.84%) 41,882,894 (93.97%) 42,255,885 (90.56%) | 1,369,568 (2.73%) 1,205,616 (2.71%) 1,269,853 (2.72%) | 94.59% 94.82% 94.49% | 48.03% 48.97% 49.25% |