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Table 2 DEGs between HAs and CK identified by illumina and validated by qRT-PCR

From: Illumina-based transcriptomic profiling of Panax notoginseng in response to arsenic stress

Gene ID Illumina sequencing QRT-PCR KO description
comp139796_c2 −53.83a −138.82 chalcone synthase
comp78650_c0 −26.86 −80.31 flavonol synthase
comp129681_c0 −3.78 −9.73 hydroxymethyl glutaryl CoA synthase
comp106407_c0 −10.00 −25.62 3-hydroxy-3-methylglutaryl-coenzyme A reductase
comp140511_c0 −3.30 −5.73 Dammarenediol-II synthase
comp126977_c0 −6.04 −4.79 glycosyltransferase
comp141084_c0 −2.13 −6.34 glycosyltransferase
comp140248_c0 6.98b 19.41 glutathione S-transferase
comp117631_c0 8.19 25.85 glutathione S-transferase
comp128853_c0 2.05 63.56 myb proto-oncogene protein, plant
comp128641_c0 2.32 2.17 myb proto-oncogene protein, plant
comp66279_c0 3.55 2.63 myb proto-oncogene protein, plant
comp128496_c0 5.93 8.83 myb proto-oncogene protein, plant
comp77739_c0 8.52 8.26 myb proto-oncogene protein, plant
comp109390_c0 6.71 5.20 heat shock transcription factor, other eukaryote
comp141438_c1 5.22 9.27 heat shock 90 kDa protein
comp142366_c1 6.33 4.68 heat shock 70 kDa protein
comp141020_c0 7.02 21.39 heat shock 70 kDa protein
comp134360_c1 12.85 9.71 heat shock 70 kDa protein
comp134360_c0 13.58 20.37 heat shock 70 kDa protein
  1. HAs seedlings of Panax notoginseng stressed by arsenic (40 mg L−1 Na2HAsO4·7H2O) for 14 days. CK seedlings for control. DEGs differentially expressed genes
  2. aNegative values represent the folds of down-regulated expression of genes in HAs compared with CK
  3. bPositive values represent the folds of up-regulated expression of genes in HAs compared with CK