Table 1 Basic bioinformatics analysis of Rab gene family in G. raimondii
From: Genome-wide characterization of the Rab gene family in Gossypium by comparative analysis
Gene name | Gene location | Number of amino acid (aa) | pI | Mw (kDa) | Chromosome | Subcellular location |
|---|---|---|---|---|---|---|
RabA1a | Gorai.002G065100.1 | 216 | 5.87 | 24.20 | Chr02 | Golgi |
RabA1b | Gorai.009G160700.1 | 218 | 5.49 | 24.09 | Chr09 | Golgi |
RabA1c | Gorai.009G374600.1 | 217 | 6.53 | 24.24 | Chr09 | Golgi |
RabA1d | Gorai.010G156800.1 | 215 | 6.12 | 23.89 | Chr10 | Golgi |
RabA1e | Gorai.010G161100.1 | 218 | 5.50 | 24.25 | Chr10 | Golgi |
RabA1f | Gorai.010G243000.1 | 217 | 5.98 | 24.01 | Chr10 | Golgi |
RabA1 g | Gorai.011G031200.1 | 217 | 5.70 | 23.90 | Chr11 | Golgi |
RabA1 h | Gorai.011G037400.1 | 218 | 5.36 | 24.01 | Chr11 | Golgi |
RabA1i | Gorai.013G172400.1 | 217 | 5.98 | 24.09 | Chr13 | Golgi |
RabA2a | Gorai.005G265900.1 | 215 | 6.76 | 23.87 | Chr05 | Golgi |
RabA2b | Gorai.003G128100.1 | 216 | 6.22 | 23.89 | Chr03 | Golgi |
RabA2c | Gorai.012G073300.1 | 216 | 6.91 | 24.01 | Chr12 | Golgi |
RabA2d | Gorai.009G320100.1 | 216 | 6.32 | 24.04 | Chr09 | Golgi |
RabA2e | Gorai.001G113000.1 | 216 | 7.01 | 23.85 | Chr01 | Golgi |
RabA2f | Gorai.004G006300.1 | 216 | 5.89 | 23.81 | Chr04 | Golgi |
RabA2 g | Gorai.011G271400.1 | 214 | 6.32 | 23.67 | Chr11 | Golgi |
RabA2 h | Gorai.008G046400.1 | 215 | 6.76 | 23.89 | Chr08 | Golgi |
RabA3a | Gorai.001G152600.1 | 232 | 5.00 | 25.49 | Chr01 | Golgi |
RabA3b | Gorai.007G110800.1 | 236 | 5.35 | 26.04 | Chr07 | Golgi |
RabA4a | Gorai.002G157000.1 | 225 | 6.62 | 24.96 | Chr02 | Golgi |
RabA4b | Gorai.003G040900.1 | 223 | 9.00 | 24.64 | Chr03 | Golgi |
RabA4c | Gorai.004G174200.1 | 229 | 6.84 | 25.16 | Chr04 | Golgi |
RabA4d | Gorai.006G140300.1 | 222 | 5.61 | 24.92 | Chr06 | Golgi |
RabA4e | Gorai.007G060000.1 | 225 | 6.84 | 24.80 | Chr07 | Golgi |
RabA4f | Gorai.007G234300.1 | 233 | 6.84 | 25.83 | Chr07 | Golgi |
RabA5a | Gorai.005G017600.1 | 219 | 5.23 | 24.53 | Chr05 | Golgi |
RabA5b | Gorai.005G022300.1 | 215 | 5.03 | 24.10 | Chr05 | Golgi |
RabA5c | Gorai.010G188100.1 | 224 | 5.12 | 24.69 | Chr10 | Golgi |
RabA5d | Gorai.001G229200.1 | 217 | 4.99 | 24.02 | Chr01 | Golgi |
RabA5e | Gorai.011G009000.1 | 224 | 5.01 | 24.69 | Chr11 | Golgi |
RabA5f | Gorai.011G144500.1 | 258 | 6.24 | 28.65 | Chr11 | Golgi |
RabA5 g | Gorai.N003900.1 | 217 | 4.83 | 24.29 | scaffold_14 | Golgi |
RabA6a | Gorai.007G004100.1 | 221 | 5.77 | 25.28 | Chr07 | Golgi |
RabA6b | Gorai.008G289500.1 | 216 | 5.88 | 24.54 | Chr08 | Golgi |
RabB1a | Gorai.009G185200.1 | 211 | 6.95 | 23.20 | Chr09 | Golgi |
RabB1b | Gorai.001G224400.1 | 218 | 6.59 | 23.73 | Chr01 | Golgi |
RabB1c | Gorai.001G267000.1 | 210 | 6.31 | 23.07 | Chr01 | Golgi |
RabB1d | Gorai.006G035100.1 | 211 | 6.90 | 23.19 | Chr06 | Golgi |
RabB1e | Gorai.011G093900.1 | 211 | 6.91 | 23.22 | Chr11 | Golgi |
RabB1f | Gorai.N000100.1 | 211 | 7.01 | 23.42 | scaffold_14 | Golgi |
RabC1a | Gorai.005G084300.1 | 212 | 5.39 | 23.60 | Chr05 | Plasma membrane |
RabC1b | Gorai.012G035500.1 | 204 | 7.55 | 22.68 | Chr12 | Plasma membrane |
RabC1c | Gorai.011G119600.1 | 208 | 6.41 | 23.25 | Chr11 | Plasma membrane |
RabC2a | Gorai.002G160900.1 | 212 | 8.47 | 23.33 | Chr02 | Plasma membrane |
RabC2b | Gorai.009G412800.1 | 212 | 5.45 | 23.18 | Chr09 | Plasma membrane |
RabC2c | Gorai.006G161100.1 | 221 | 6.62 | 24.12 | Chr06 | Golgi |
RabC2d | Gorai.011G234300.1 | 218 | 8.93 | 24.15 | Chr11 | Golgi |
RabC2e | Gorai.007G372500.1 | 217 | 5.62 | 23.69 | Chr07 | Golgi |
RabD1a | Gorai.005G266000.1 | 201 | 5.93 | 22.35 | Chr05 | Golgi |
RabD1b | Gorai.008G046500.1 | 201 | 5.15 | 22.44 | Chr08 | Cytoplasmic |
RabD2a | Gorai.003G111900.1 | 203 | 7.59 | 22.56 | Chr03 | Golgi |
RabD2b | Gorai.003G176500.1 | 203 | 5.52 | 22.60 | Chr03 | Golgi |
RabD2c | Gorai.004G070000.1 | 203 | 5.27 | 22.49 | Chr04 | Golgi |
RabD2d | Gorai.004G194200.1 | 203 | 5.14 | 22.60 | Chr04 | Golgi |
RabD2e | Gorai.007G085600.1 | 203 | 5.09 | 22.46 | Chr07 | Golgi |
RabE1a | Gorai.002G253800.1 | 215 | 7.64 | 23.71 | Chr02 | Plasma membrane |
RabE1b | Gorai.009G101400.1 | 217 | 8.37 | 24.01 | Chr09 | Cytoplasmic |
RabE1c | Gorai.009G424200.1 | 215 | 7.64 | 23.72 | Chr09 | Plasma membrane |
RabE1d | Gorai.010G140100.1 | 215 | 6.61 | 23.76 | Chr10 | Cytoplasmic |
RabE1e | Gorai.006G175600.1 | 216 | 7.64 | 23.80 | Chr06 | Plasma membrane |
RabE1f | Gorai.011G255400.1 | 206 | 5.93 | 22.70 | Chr11 | Plasma membrane |
RabE1 g | Gorai.013G023100.1 | 214 | 7.64 | 23.64 | Chr13 | Plasma membrane |
RabE1 h | Gorai.013G265100.1 | 215 | 7.64 | 23.62 | Chr13 | Golgi |
RabF1 | Gorai.011G237500.1 | 213 | 6.6 | 23.28 | Chr11 | Golgi |
RabF2a | Gorai.002G059500.1 | 225 | 6.44 | 24.92 | Chr02 | Golgi |
RabF2b | Gorai.009G024300.1 | 200 | 9.34 | 22.32 | Chr09 | Cytoplasmic |
RabF2c | Gorai.009G150100.1 | 200 | 7.71 | 21.77 | Chr09 | Golgi |
RabF2d | Gorai.010G070200.1 | 203 | 9.54 | 22.80 | Chr10 | Cytoplasmic |
RabF2e | Gorai.010G171600.1 | 228 | 5.00 | 25.35 | Chr10 | Golgi |
RabF2f | Gorai.010G236900.1 | 200 | 7.74 | 21.81 | Chr10 | Golgi |
RabF2 g | Gorai.001G005000.1 | 200 | 9.52 | 22.69 | Chr01 | Cytoplasmic |
RabF2 h | Gorai.006G091700.1 | 203 | 4.99 | 22.55 | Chr06 | Golgi |
RabG2 | Gorai.008G101600.1 | 208 | 5.08 | 23.46 | Chr08 | Vacuole |
RabG3a | Gorai.005G076500.1 | 213 | 6.30 | 24.57 | Chr05 | Vacuole |
RabG3b | Gorai.005G242800.1 | 207 | 5.06 | 23.05 | Chr05 | Vacuole |
RabG3c | Gorai.003G064900.1 | 207 | 5.42 | 23.19 | Chr03 | Vacuole |
RabG3d | Gorai.009G259500.1 | 205 | 5.49 | 23.03 | Chr09 | Vacuole |
RabG3e | Gorai.006G098100.1 | 207 | 4.80 | 23.27 | Chr06 | Vacuole |
RabG3f | Gorai.011G074700.1 | 208 | 5.37 | 23.27 | Chr11 | Vacuole |
RabG3 g | Gorai.008G028300.1 | 206 | 5.09 | 23.01 | Chr08 | Vacuole |
RabG3 h | Gorai.013G037800.1 | 207 | 5.10 | 23.22 | Chr13 | Vacuole |
RabH1a | Gorai.004G037900.1 | 208 | 6.38 | 23.18 | Chr04 | Golgi |
RabH1b | Gorai.004G067600.1 | 208 | 7.70 | 23.20 | Chr04 | Golgi |
RabH1c | Gorai.007G060700.1 | 208 | 7.67 | 23.09 | Chr07 | Golgi |
RabH1d | Gorai.007G238500.1 | 208 | 6.38 | 23.18 | Chr07 | Golgi |
RabH1e | Gorai.008G090100.1 | 207 | 7.67 | 23.17 | Chr08 | Golgi |
RabH1f | Gorai.008G111500.1 | 208 | 5.94 | 23.10 | Chr08 | Golgi |