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Table 1 Summary of plastid RNA edits in Phalaenopsis orchid

From: Whole plastid transcriptomes reveal abundant RNA editing sites and differential editing status in Phalaenopsis aphrodite subsp. formosana

 

Leaf

Flower

Commona

Total

Reportedb

Protein coding transcripts

67

69

57

79

43

 1st codon position

9

10

7

12

4

 2nd codon position

47

51

43

55

39

 3rd codon position

11

8

7

12

0

 Creation of start codon

2

2

1

3

1

 Creation of stop codon

4

5

3

6

0

 Nonsynonymous substitution

50

54

46

58

42

 Synonymous substitution

11

8

7

12

1

Non-protein coding transcripts

43

37

22

58

1

 tRNA

1

1

1

1

0

 rRNA

0

0

0

0

0

 Intron

4

6

2

8

0

 Intergenic spacer (IGS)

38

30

19

49

1

Total

110

106

79

137

44

  1. aCommon RNA edits in both leaf and floral with editing status >5%
  2. bPreviously reported in Zeng et al. (2007)