Table 3 Top 20 KEGG pathways of different expression genes in leaves and roots
Organs | Term | Gene number | Background number | P-value | Corrected P-value | Hyperlink |
|---|---|---|---|---|---|---|
Leaves | Cysteine and methionine metabolism | 15 | 164 | 7.70E−07 | 0.000141601 | |
Plant hormone signal transduction | 19 | 320 | 1.77E−05 | 0.001632768 | ||
Photosynthesis—antenna proteins | 6 | 37 | 7.20E−05 | 0.00441311 | ||
Other glycan degradation | 3 | 23 | 0.009632561 | 0.338207262 | ||
Porphyrin and chlorophyll metabolism | 5 | 69 | 0.010937551 | 0.338207262 | ||
Biosynthesis of secondary metabolites | 43 | 1546 | 0.011028498 | 0.338207262 | ||
Cyanoamino acid metabolism | 4 | 56 | 0.02325574 | 0.523505194 | ||
Valine, leucine and isoleucine degradation | 5 | 85 | 0.024892835 | 0.523505194 | ||
Biosynthesis of amino acids | 16 | 479 | 0.025606232 | 0.523505194 | ||
Metabolic pathways | 70 | 2916 | 0.033671031 | 0.553343443 | ||
Ascorbate and aldarate metabolism | 4 | 66 | 0.039317106 | 0.553343443 | ||
Pantothenate and CoA biosynthesis | 3 | 41 | 0.04494819 | 0.553343443 | ||
Carotenoid biosynthesis | 3 | 41 | 0.04494819 | 0.553343443 | ||
Lysine degradation | 3 | 41 | 0.04494819 | 0.553343443 | ||
Beta-Alanine metabolism | 4 | 69 | 0.04510952 | 0.553343443 | ||
Novobiocin biosynthesis | 1 | 6 | 0.110953484 | 1 | ||
Chlorocyclohexane and chlorobenzene degradation | 1 | 6 | 0.110953484 | 1 | ||
Phosphonate and phosphinate metabolism | 1 | 7 | 0.128212836 | 1 | ||
Styrene degradation | 1 | 7 | 0.128212836 | 1 | ||
Nitrogen metabolism | 3 | 65 | 0.13220423 | 1 | ||
Terpenoid backbone biosynthesis | 3 | 67 | 0.141100694 | 1 | ||
Benzoate degradation | 1 | 8 | 0.14513793 | 1 | ||
Roots | Ribosome | 16 | 979 | 0.000125245 | 0.023045141 | |
RNA transport | 6 | 257 | 0.003419288 | 0.267326383 | ||
Biotin metabolism | 2 | 22 | 0.006784043 | 0.267326383 | ||
Hippo signaling pathway—fly | 3 | 75 | 0.008823808 | 0.267326383 | ||
Arginine and proline metabolism | 4 | 147 | 0.00971839 | 0.267326383 | ||
Adherens junction | 3 | 79 | 0.010167104 | 0.267326383 | ||
Regulation of actin cytoskeleton | 4 | 153 | 0.011134171 | 0.267326383 | ||
Biosynthesis of unsaturated fatty acids | 3 | 83 | 0.011622886 | 0.267326383 | ||
Tight junction | 3 | 94 | 0.016,217,849 | 0.331,564,911 | ||
Hippo signaling pathway | 3 | 110 | 0.024479743 | 0.438901021 | ||
Focal adhesion | 3 | 113 | 0.026238648 | 0.438901021 | ||
Fatty acid biosynthesis | 2 | 49 | 0.031,291,426 | 0.450,398,707 | ||
Phagosome | 4 | 211 | 0.031821648 | 0.450398707 | ||
Two-component system | 2 | 52 | 0.03,490,051 | 0.458,692,412 | ||
Benzoate degradation | 1 | 8 | 0.044298565 | 0.543395733 | ||
Nitrogen metabolism | 2 | 65 | 0.052231368 | 0.600660726 | ||
Fatty acid metabolism | 3 | 153 | 0.055894477 | 0.60497552 | ||
Arachidonic acid metabolism | 1 | 25 | 0.132,075,196 | 1 | ||
Alanine, aspartate and glutamate metabolism | 2 | 114 | 0.135824158 | 1 | ||
Pentose and glucuronate interconversions | 2 | 124 | 0.155261816 | 1 |