Table 1 Summary of the sequencing and assembly of six H. erinaceus strain samples
Sequencing index | HT-4903 | GT-06 | CC-02 | PZH-05 | TJH-03 | TD-04 |
|---|---|---|---|---|---|---|
Total number of clean reads | 28,172,192 | 44,081,115 | 24,313,274 | 21,587,820 | 22,681,715 | 46,117,401 |
Total number of clean bases (Gb) | 8.32 | 13.06 | 7.15 | 6.36 | 6.67 | 13.52 |
GC content (%) | 56.77 | 56.62 | 56.51 | 57 | 56.13 | 53.36 |
Q30 content (%) | 97.21 | 97.07 | 97.24 | 96.77 | 97.13 | 97.28 |
Total number of transcripts | 36,945 | 40,141 | 36,065 | 25,905 | 47,294 | 40,590 |
N50 value of transcript (bp) | 2579 | 2220 | 2470 | 2946 | 1991 | 1990 |
Total bases of transcript (Mb) | 58.14 | 55.24 | 55.51 | 46.58 | 53.11 | 47.69 |
Total number of unigene | 22,618 | 24,915 | 22,284 | 20,902 | 37,259 | 28,640 |
Median length of unigene (bp) | 549 | 498 | 574 | 1012 | 450 | 438 |
N50 value of unigene (bp) | 2195 | 1944 | 2111 | 2431 | 1668 | 1708 |
Total bases of unigene (Mb) | 26,13 | 25,66 | 25,47 | 31 | 33,54 | 25,82 |