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Table 2 List of genes identified in the studied chloroplast genomes of 11 species of Senecioneae

From: Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics

Gene familyGene
Transfer RNAtrnA-UGC*, trnfM-CAU, trnI-GAU*, trnM-CAU, trnR-ACG, trnS-UGA, trnC-GCA, trnG-GC, trnK-UUU*, trnN-GUU, trnW-CCA, trnT-GGU, trnD-GUC, trnV-UAC*, trnL-CAA, trnY-GUA, trnR-UCU, trnT-UGU, trnE-UUC, trnH-GUG, trnL-UAA*, trnP-UGG, trnS-GCU, trnV-GAC, trnF-GAA, trnI-CAU, trnL-UAG, trnQ-UUG, trnS-GGA, trnG-UCC*
Small ribosomal unitsrps2,3,4,7,8,11,12a,14,15,16*,18,19b
Large ribosomal unitsrpl2*,14,16*,20,22,23,32,33,36
RNA polymerase sub-unitsrpoA, rpoB, rpoC1*, rpoC2
Translation initiation factoinfA
NADH dehydrogenasendhA*, ndhB*, ndhC, ndhDb, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
Photosystem IpsaA, psaB, psaC, psaI, psaJ, ycf3**, ycf4
Photosystem IIpsbA,B,C,D,E,F,H,I,J,K,Lb,M,N,T,Z
Cytochrome b/f complexpetA, petB*, petD*, petG, petL, petN
ATP synthaseatpA, atpB, atpE, atpF*, atpH, atpI
Large subunit of rubiscorbcL
MaturasematK
ProteaseclpP**
Acetyl-CoA-carboxylase sub-unitaccD
Envelope membrane proteincemA
Component of TIC complexycf1
c-Type cytochrome synthesisccsA
Hypothetical genes reading framesycf2, ycf15
Ribosomal RNArrn4.5, rrn5, rrn16, rrn23
  1. * Genes with a single intron, ** genes with two introns, a trans-spliced genes, b genes with an alternative start codon