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Table 2 List of genes identified in the studied chloroplast genomes of 11 species of Senecioneae

From: Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics

Gene family Gene
Transfer RNA trnA-UGC*, trnfM-CAU, trnI-GAU*, trnM-CAU, trnR-ACG, trnS-UGA, trnC-GCA, trnG-GC, trnK-UUU*, trnN-GUU, trnW-CCA, trnT-GGU, trnD-GUC, trnV-UAC*, trnL-CAA, trnY-GUA, trnR-UCU, trnT-UGU, trnE-UUC, trnH-GUG, trnL-UAA*, trnP-UGG, trnS-GCU, trnV-GAC, trnF-GAA, trnI-CAU, trnL-UAG, trnQ-UUG, trnS-GGA, trnG-UCC*
Small ribosomal units rps2,3,4,7,8,11,12 a ,14,15,16*,18,19 b
Large ribosomal units rpl2*,14,16*,20,22,23,32,33,36
RNA polymerase sub-units rpoA, rpoB, rpoC1*, rpoC2
Translation initiation facto infA
NADH dehydrogenase ndhA*, ndhB*, ndhC, ndhD b, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
Photosystem I psaA, psaB, psaC, psaI, psaJ, ycf3**, ycf4
Photosystem II psbA,B,C,D,E,F,H,I,J,K,L b ,M,N,T,Z
Cytochrome b/f complex petA, petB*, petD*, petG, petL, petN
ATP synthase atpA, atpB, atpE, atpF*, atpH, atpI
Large subunit of rubisco rbcL
Maturase matK
Protease clpP**
Acetyl-CoA-carboxylase sub-unit accD
Envelope membrane protein cemA
Component of TIC complex ycf1
c-Type cytochrome synthesis ccsA
Hypothetical genes reading frames ycf2, ycf15
Ribosomal RNA rrn4.5, rrn5, rrn16, rrn23
  1. * Genes with a single intron, ** genes with two introns, a trans-spliced genes, b genes with an alternative start codon