Explore the genetics of weedy traits using rice 3K database

Botanical Studies

Table 3 Awn-associated SNPs identified within WR panel

SNP	P.value	No. Gene ± 100 kb	Candidate genes	Annotation
S1_2958149	1.65E−06	42	Os01g0155000	Alpha/beta hydrolase fold-3 domain containing protein
S1_38916854	2.89E−09	34	Os01g0895200	DOMON related domain containing protein
S4_21610862	4.36E−07	27	Os04g0434600	Similar to OSIGBa0102D10.3 protein
S5_6339023	3.68E−08	20
S6_4425573	1.67E−06	31	Os06g0187700	Conserved hypothetical protein

Markers were named based on their genomic position on the reference sequence (cv Nipponbarre, IRGSP v1) for S[chromosome]_[bp position on the chromosome]. When the trait-associated SNP fell into an annotated gene, the gene name was indicated in the column of “Candidate gene”. Annotation was from RAP-DB