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Silencing of PhLA, a CIN-TCP gene, causes defected petal conical epidermal cell formation and results in reflexed corolla lobes in petunia



TCP-domain proteins, plant specific transcription factors, play important roles in various developmental processes. CIN-TCPs control leaf curvature in simple leaf species while regulate leaf complexity in compound leaf species. However, the knowledge was largely based on findings in few model species. To extend our knowledge on this group of proteins in Solanaceae species, we identified a CIN-TCP gene from petunia, and studied its functions using virus-induced gene silencing (VIGS).


Consistently, silencing of CIN-TCPs increases complexity of tomato leaves, and enhances leaf curvature in Nicotiana benthamiana. However, in petunia (Petunia hybrida), silencing of petunia LA, a CIN-TCP, through VIGS did not obviously affect leaf shape. The silencing, however, enhanced petal curvature. The event was associated with petal expansion at the distal portion where epidermal cell size along the midribs was also increased. The enlarged epidermal cells became flattened. Although shapes of PhLA-silenced flowers largely resemble phmyb1 mutant phenotype, PhMYB1 expression was not affected when PhLA was specifically silenced. Therefore, both PhLA and PhMYB1 are required to regulate flower morphology. In corolla, PhLA and miR319 deferentially express in different regions with strong expressions in limb and tube region respectively.


In conclusion, unlike LA-like genes in tomato and N. benthamiana, PhLA plays a more defined role in flower morphogenesis, including petal curvature and epidermal cell differentiation.


Plant stature is controlled by tightly regulated developmental processes where TCP transcription factors play important roles (Dhaka et al. 2017; Rosin and Kramer 2009). A genome wide study on transcription factors of tobacco (Nicotiana tabacum) revealed that the expansion of TCP family is strongly associated with the evolutionary diversity in Solanaceae (Rushton et al. 2008). TCP-domain proteins participate in various developmental processes, including floral symmetry, axillary bud outgrowth, leaf curvature, shape avoidance, and flowering (Doebley et al. 1997; Luo et al. 1999; Nath et al. 2003; Silva et al. 2019; Zhou et al. 2018). However, studies of TCP proteins are largely restricted to few model organisms. To extend our knowledge to how TCP proteins contribute to the diverse forms of Solanaceae species, we identified the ortholog of tomato (Solanum lycopersicum) LANCEOLATE (LA), a CIN-like TCP gene, from petunia (Petunia hybrida), and named it PhLA. Its function on organ shape regulation in petunia was investigated using virus-induced gene silencing (VIGS).

TCP proteins, containing a conserved non-canonical basic-Helix-Loop-Helix (bHLH) domain, were first defined after three funding members, TEOSINTE BRANCHED1 (TB1) from maize (Zea mays), CYCLOIDEA (CYC) from Antirrhinum (Antirrhinum majus) and PROLIFERATING CELL FACTORS (PCFs) from rice (Oryza sativa) (Cubas et al. 1999). The conserved domain, named TCP domain, composed of 59 amino acids, is required for DNA binding and the interaction between proteins (Cubas et al. 1999). Based on differences in their TCP domains, this family of transcription factors can be divided into two groups, with PCFs in class I and TB1 as well as CYC in class II (Hilernan and Preston 2009; Howarth and Donoghue 2006). PCF1 and PCF2 were found to bind the promoter of the PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) gene and promote cell proliferation (Kosugi and Ohashi 1997). TB1 prevents axillary bud outgrowth (Cubas et al. 2007; Doebley et al. 1997), and CYC along with another TCP protein, DICHOTOMA (DICH), establish zygomorphic symmetry of Antirrhinum flowers (Galego and Almeida 2002; Luo et al. 1996; 1999). The origin of TCP proteins can be tracked back to the ancestor of land plant lineage, and is considered to be important for evolution of multicellularity (Floyd and Bowman 2007). Duplication and diversification during evolution made the family become larger and associated to various floral traits (Chapman et al. 2008; Mondragon-Palomino and Trontin 2011).

The class II members can be further divided into the ECE clade, including CYC and TB1, and the CIN clade, including CINCINNATA from Antirrhinum and TCP4 from Arabidopsis (Arabidopsis thaliana) (Hilernan and Preston 2009). CIN suppresses cell division during leaf lamina development in Antirrhinum, and therefore control leaf curvature (Nath et al. 2003). While suppressing cell division, CIN promotes growth of Antirrhinum petal lobes (Crawford et al. 2004). Eight CIN class genes were distinguished from a total of 24 TCP genes in Arabidopsis genome (Martin-Trillo and Cubas 2010). Among them, TCP2, 3, 4, 10 and 24 are post-transcriptionally regulated by miR319. jaw-D mutations resulted in transcription suppression of these genes due to ectopically expressed miR319a, and led to phenotypes largely resembling those of cin mutants in which crinkly leaves particularly on the margins were exhibited (Palatnik et al. 2003). Mutations on one CIN-TCP alone in Arabidopsis, however, exhibit very mild phenotypic changes (Schommer et al. 2008); however, when expressions of more and more members of this group were suppressed, dramatic synergic effects in leaf development were observed and led to extremely large and serrated leaves (Efroni et al. 2008). These results suggest a functional redundancy among CIN-TCP genes in Arabidopsis. Loss of CIN-TCP activity affects leaf curvature in simple leaf species while suppression of the activity enhances the complexity of tomato leaves, a compound leaf species (Ori et al. 2007). On the other hand, misexpression of LA due to mutation on its miR319 recognition site resulted in the conversion of tomato compound leaf into simple one (Ori et al. 2007). It was hypothesized that this group of proteins promotes leaf maturation and is important for timing control of the transition from the morphogenetic phase to the differentiation phase. Indeed, the alteration of LA transcript abundance was associated with the timing of growth arrest and maturation of tomato leaves (Shleizer-Burko et al. 2011). Interestingly, leaf size can also be controlled by manipulation of the activation time of CIN-TCPs during leaf maturation in Arabidopsis. Precocious activation of a miR319 insensitive version of TCP4 led to generation of miniature leaves. In contrast, delayed activation of CIN-TCPs exhibited expanded leaves (Efroni et al. 2008). The findings suggest that the dynamic spatial and temporal controls of this maturation program are a reason for diverse leaf sizes and shapes.

Functions of CIN-TCPs in controlling leaf morphogenesis have been studied in depth while their roles in flower development are less understood. However, it was shown that misexpression of a miR319 insensitive form of TCP4 (mTCP4), but not a wild type copy of TCP4, suppressed petal growth (Nag et al. 2009), while reduction of CIN-TCP activity because of mutations in CIN-TCP genes or over-expression of an artificial repressor protein, TCP5-SRDX, where the TCP5 was fused with a strong transcriptional repressor domain, SRDX, yielded serrated and wavy petals (Koyama et al. 2011). The same chimeric TCP-repressor strategy was applied to Cyclamen persicum to create ruffled petals for this commercially important floriculture plant (Tanaka et al. 2011). The results suggest that like their functions in leaf development, CIN-TCPs also negatively regulate cell division during petal development. However, cell proliferation was reduced in petal lobes of Antirrhinum when CIN was mutated (Crawford et al. 2004). Therefore, further studies will be needed to clarify how CIN-TCPs regulate petal development.

We took the advantage of a rapid functional analysis technique, VIGS, to characterize the effects of knocking down LA-like genes on leaf and flower development in petunia, tomato, and N. benthamiana. A TRV-based gene silencing system that utilizes chalcone synthase (CHS) gene as gene silencing marker to distinguish floral tissues with target gene silenced (white flowers) to those without target gene silenced (purple flowers) has been developed for petunia (Chen et al. 2004). Using the system, we have successfully knocked down expression of PhLA and characterized its functions in flower shape regulation in petunia. The effects of LA-like gene silencing were also compared among petunia, tomato, and N. benthamiana.

Materials and methods

Plant material and growth condition

Petunia (Petunia × hybrida cv. Primetime Blue) seeds were produced by Goldsmith Seeds (Gilroy, CA, USA), and W115 seeds were kindly provided by Dr. Tom Gerats, Radboud University, Netherlands. Solanum lycopersicum cv. 5915 and Nicotiana benthamiana seeds were gifts from Dr. Chiu-Ping Cheng, National Taiwan University, Taiwan. Plants were grown in a culture room at 23 ± 3 °C under 16 h light/8 h dark cycles.

Phylogenetic analysis

Phylogenetic analysis of PhLA coding sequence with sequences encoding other TCP domain proteins was conducted using MAGA 5.0 by the maximum likelihood (ML) method with bootstrap value calculated from 1000 replicates. The partial sequence information for PhLA was first obtained from a petunia EST collection (accession number CV298738), which contains the 5′ half of the transcript, and rapid amplification of DNA ends PCR was used to extend the 3′-end sequence. The coding sequences were translated into amino acid sequences for alignment and then the aligned sequences were shifted back to nucleotide sequences for phylogenetic analysis. Only the first two positions of codons were used in the analysis. Genebank accession numbers of sequences used in the analysis are: PhLA (), SlLA (EF091571), SlTCP3 (EF091574), SlTCP10 (NM_001247647), AmCIN (AY205603), AmCYC (AY316729), AmDICH (AF199465), AtTCP4 (NM_112365), AtTCP2 (NM_117950), AtTCP24 (NM_102760), AtTCP5 (NM_125490), AtTCP17 (NM_120889), AtTCP13 (NM_111082), AtTCP1 (NM_001160982), AtBRC1 (NM_112741), AtBRC2 (NM_105554), ZmTB1 (ZMU94494). Here, the first two letters of gene symbols represent the organisms in which they are Am for Antirrhinum majus, At for Arabidopsis thaliana, Sl for Solanum lycopersicum, and Zm for Zea mays.


Tobacco rattle virus–based VIGS vectors, pTRV1 and pTRV2, were kindly provided by Dr. Dinesh-Kumar, Yale University, USA (Liu et al. 2002). The pTRV2 was previous modified to include a CHSJ fragment as a silencing reporter (Chen et al. 2004), and the derived construct, named pTRV2 CHS, was used as a control in silencing experiments.

Two PhLA cDNA fragments were used to knockdown expression of PhLA. A fragment from 28 bp before start codon (− 28) to 219 bp after the start codon (+ 219) was cloned into pTRV2 CHS to create pTRV2 CHS/LA-1. This fragment contains a conserved sequence region encoding TCP domain and was designed to knockdown expression of more than PhLA. The other fragment from − 235 bp to − 5 bp was also cloned into pTRV2 CHS to generate pTRV2 CHS/LA-2. This fragment is at the 5′-UTR of the PhLA transcript to ensure a specific gene silencing on PhLA (Fig. 1a).

Fig. 1

Schematic representation of PhLA cDNA and phylogram of its sequence with other reported TCPs. a cDNA structure of PhLA. Relative positions of PhLA open reading frame and the 5′ and 3′ UTR are indicated. The blue box marks the region encoding TCP domain and the yellow line shows the location of miR319 recognition site. Two fragments used for VIGS analysis are indicated in green, and the black line shows the probe region for in situ hybridization. Arrows show location and direction of primers used to measure transcript abundance. b Phylogenetic tree for TCP genes. Class II TCPs were divided into CYC/TB subclade and CIN subclade. PhLA was grouped in CIN subclade and is most closely related to SlLA in all genes analyzed. The transcripts containing a miR319 recognition site are underlined. For sequences used in this study, their GenBank accession numbers are listed in “Materials and methods

VIGS was carried out using Agrobacterium-mediated transfection as described by Chen et al. (2004). Seedlings at 3–4 true leaf stage for petunia as well as N. benthamiana, and at the first true leaf stage for tomato cv. 5915 were used for all gene silencing experiments.

Real time RT-PCR analysis

Total RNA of petunia was extracted using the TRIzol reagent (Invitrogen Corporation, Carlsbad, CA) based on manufacturer’s instruction. Before cDNA synthesis, total RNA was treated with TURBO DNA-free kit (Invitrogen Corporation, Carlsbad, CA) to remove any contaminating DNA. First-strand cDNA was synthesized using MMLV reverse transcriptase (Invitrogen Corporation, Carlsbad, CA), and used as template for real time PCR. PCR primers were designed outside of the regions used for VIGS to prevent cross detection to TRV2 that contains target gene fragment. Primers for amplifying PhLA transcripts were 5′-CGAGTCTAATTCAATGGCGTGC-3′ and 5′-AGACTTGTCATGCTGTTGCC-3′. Primers for amplifying PhMYB1 transcripts were 5′-GAGACATTCACAGACCTTTTGC-3′ and 5′-AACATAGCTGAATCTGAGGGTG-3′. ACTIN was used as internal control and primers for amplifying its transcripts were 5′-TTGTCCGTGACATGAAGGAA-3′ and 5′-TCGATGGCTGGAAGAGAACT-3′. The PCR products were sequenced to ensure the amplification of correct genes. Results were tested in at least two independent experiments, three samples and three replications. The relative expression of target genes was calculated by the 2−ΔΔCT method and displayed as fold change when compared with the control group.

In situ hybridization

The in situ hybridization protocol basically follows Wang et al. (2008) which is designed for step by step optimization for non model plants. Collected petunia inflorescences were fixed in ice cold fresh paraformaldehyde and dehydrated through ethanol/xylene series for later parafilm embedding. The embedded tissues were sectioned to 8 μm slides with microtome and hybridized with DIG-labeled RNA probes. The 346 nt probe was designed from 664 to 1009 of PhLA transcript (Fig. 1). The cDNA fragment corresponding to this region was cloned into pGEM-T easy between SpeI and NcoI sites. In vitro transcription was used to produce sense and antisense PhLA probes. For miR319 detection, a locked nucleic acid (LNA) oligonucleotide probe was synthesized by substituting every third nucleotide with a LNA monomer (Exiqon), and the 5′-End and 3′-End of this probe were labeled with DIG.

Scanning electron microscopy

Petunia flower segments were collected and fixed in FAA. Tissues were dehydrated through ethanol series to 100% acetone, then precede to critical point drying by HCP-2 (Hitachi Ltd, Japan) and ion coater (IB-2, Eiko Engineering, Japan) to sputter-coat with gold/palladium. The coated tissues were then observed under Scanning Electronic Microscope.


Isolation of petunia LANCEOLATE from petunia and sequence analysis

A putative CIN-TCP sequence (accession number CV298738) was identified from a petunia floral expressed sequence tag (EST) database using the tBLASTn tool with CINCINNATA (CIN) amino acid sequence as the query. A 247 bp partial sequence, which contains part of conserved sequence encoding TCP domain, of this EST was then amplified from petunia floral cDNAs and sequenced. The fragment was then cloned into the TRV2 vector containing a CHS cDNA fragment for VIGS (Fig. 1a). To obtain the full length coding sequence (CDS) of this CIN-TCP, RACE-PCR was used and a fragment of 1961 bp containing a 1257 bp of the CDS was amplified (accession number). The nucleotide sequence of this CDS shares 81 to 82% identities with other LANCEOLATE CDS sequences while its deduced amino acid sequence shares 78% identities with LANCEOLATE from other Solanaceae species, including tomato (accession number ABM65599), Capsicum annuum (ADN51990), Solanum tuberosum (ADN51992), and Solanum melongena (ADN51991); 59% identity with Antirrhinum CIN (AAO43102); and 47% identity with Arabidopsis TCP4 (AT3G15030). The sequence identities among reported LANCEOLATE proteins from Solanaceae species are around 80%, and therefore, we named the petunia CIN-TCP Petunia LANCEOLATE (PhLA). The transcript of PhLA also contains a miR319 recognition site at positions 984 to 1104 (Fig. 1a). A phylogenetic analysis of known class II TCPs using bootstrap consensus for maximum likelihood (ML) revealed that PhLA is most closely related with tomato LANCEOLATE, and with other miR319 regulated CIN-TCPs (Fig. 1b).

Silencing of LA-like genes altered leaf morphology in N. benthamiana and tomato, but not in petunia

To examine the function of LA-like genes in petunia, we inoculated young petunia seedlings with TRV containing CHS/LA-1 tandem fragment (TRV chs/la-1) using Agrobacterium-mediated infection. Virus-induced silencing of LA-like genes in petunia, however, did not result in leaf lamina overgrowth (Fig. 2a), which was observed in Antirrhinum, Arabidopsis, and tomato when activity of their CIN-TCPs were repressed (Nath et al. 2003; Ori et al. 2007; Palatnik et al. 2003). Since it was shown that lose of tomato LA activity led to enhanced leaf complexity, the same TRV chs/la-1 was used to infect tomato seedlings, and indeed, in the virus-infected tomato plants, the complexity of tomato compound leaves increased presumably due to silencing of LA-like genes because nucleotide sequence of the la-1 region shares 91% identity with tomato LA (Fig. 2c). Silencing of LA-like genes by inoculation of the TRV chs/la-1 into N. benthamiana also resulted in enhanced leaf curvature, particularly at the margins (Fig. 2b). Because silencing of PhLA did not result in visible morphological changes in leaves, transcript abundance of PhLA in leaves was examined using real-time RT-PCR, and the results indicate a significant downregulation of PhLA was in leaves of TRV chs/la-1, and TRV chs/la-2 infected petunia plants (Fig. 3b). Therefore, the lack of morphological changes in petunia leaves was not due to inefficient gene silencing in leaves.

Fig. 2

Comparison of effects of silencing LA-like genes on leaf morphology in petunia (Petunia hybrida), Nicotiana benthamiana, and tomato (Solanum lycopersicum). a Petunia leaves with or without LA-like gene silenced. No obvious morphological change on petunia leaves is observed. b N. benthamiana leaves with or without LA-like gene silenced. Leaf curvature is increased when N. benthamiana plants infected with TRV carrying a fragment of PhLA sequence. Abaxial side of the leaves shows outgrowth on the leaf margins. c Tomato leaves with or without LA-like gene silenced. The fourth leaves of tomato plants were compared

Fig. 3

Effects of silencing PhLA on petunia flower. a Petunia flowers with or without PhLA silenced. White flowers of petunia plants infected with either TRV chs/la-1, which contains a conserved fragment of PhLA cDNA, or TRV chs/la-2, which contains a gene specific fragment of PhLA cDNA, shows strongly reflexed corolla lobes. b Relative expression of PhLA in leaves (gray bars) or white flowers (white bars) of petunia plants infected with TRV chs, TRV chs/la-1, or TRV chs/la-2. c Relative expression of PhMYB1 in leaves (gray bars) or white flowers (white bars) of petunia plants infected with TRV chs/la-1 TRV chs, TRV chs/la-1, or TRV chs/la-2. Transcript abundances of PhLA and PhMYB1 are relative to those in white flowers of the TRV chs group. Expression of ACTIN gene was used as an internal control. *Indicates significant differences to the control groups (*P < 0.05, **P < 0.005)

Silencing of LA-like genes enhanced corolla curvature in petunia

Though silencing of LA-like genes in petunia did not cause any obvious changes in leaf development, clearly, it resulted in enhanced petal curvature (Fig. 3a). White flowers, indicating successful silencing in both CHS and LA genes, of petunia plants infected with TRV chs/la-1 were strongly curved backward (Fig. 3a). Because PhLA fragment in TRV chs/la-1 is in a conserved region, it is very possible that in addition to PhLA, other LA-like genes were silenced. In order to understand whether the change in PhLA activity alone will be effective enough to affect the petal curvature, a gene specific sequence was amplified from 5′-UTR of PhLA and cloned into pTRV2 (TRV chs/la-2) for VIGS since un-translated regions are generally gene specific and the use of 5′-UTR also limited silencing of non-targets through transitive RNA silencing (Xie and Guo 2006). Indeed, white flowers of petunia plants infected with TRV chs/la-2 also exhibited similar shapes to those infected with TRV chs/la-1 (Fig. 3a).

N. benthamiana flowers infected with TRV chs/la-1 also curved slightly backward (Additional file 1: Fig. S1). Flowers from tomato plants infected with TRV chs/la-1, however, did not show enhanced petal curvature (data not shown).

The petal presentation in PhLA silenced flowers largely resembled the floral phenotype observed in phmyb1 mutants (Baumann et al. 2007). Similar to MIXTA in Antirrhinum, PhMYB1, another R2R3 MYB transcription factor, controls the development of conical epidermal cells in petunia petals (Baumann et al. 2007). Mutations in PhMYB1 affected epidermal cell differentiation in petals and resulted in flat epidermal cells. Interestingly, the defect in conical cell development also led to alteration in petal presentation (Baumann et al. 2007). Since both PhLA silencing and phmyb1 mutants increased petal curvature, we examined whether the morphological changes caused by PhLA silencing was resulted from reduction of PhMYB1 expression. Our results show that PhLA can be efficiently silenced in both leaves and flowers using either a conserved fragment (TRV chs/la-1) or a gene specific fragment (TRV chs/la-2). Silencing of PhLA in flowers did not significantly affect the transcript abundance of PhMYB1 while silencing of PhLA in leaves using a conserved sequence fragment (TRV chs/la-1) resulted in downregulation of PhMYB1 (Fig. 3c). When comparing transcript abundance of PhLA and PhMYB1 between flowers and leaves, we found that transcripts of PhLA was significantly more abundant in flowers than those in leaves while transcripts of PhMYB1 was significantly more abundant in leaves than those in flowers (Fig. 3b, c).

Changes in petal lobe shapes in PhLA silenced petunia flowers

The reflexed petal curvature caused by PhLA silencing should be due to shape changes in corollas. We compared the length, width, and distance between sinuses of lobes between flowers infected with TRV chs (flowers with corolla limb curvature close to zero) and those infected with TRV chs/la (flowers with negative corolla limb curvature). Both length and width of PhLA silenced flower lobes were significantly longer; however, the distance between sinuses in these flowers were much shorter. The ratio of width/length was not changed; however, the ratio of distance between sinuses/length in PhLA silenced flowers was reduced from 1.7 to 1.4 (Table 1). The overall area sizes in both groups, however, were the same. These measurements indicate that the outer lobe areas of PhLA silenced corollas were slightly expanded while their inner lobe areas became smaller. Therefore, we also observed a larger overlapping area between two lobes of PhLA silenced corollas.

Table 1 Measurements of lobes of fully expanded white flowers from TRV chs infected and TRV chs/la-1 infected plants

In addition to measurements in corolla limbs, we measured their corolla tube length, tube smallest width, and tube largest width. In these measurements, we did not find any significant differences between compared two groups (data not shown).

Silencing of PhLA affecting epidermal cell shapes in corolla limb

The changes in petal lobe shape can result from changes in petal cell shapes or cell numbers, and mutations on CINCINNATA in Antirrhinum gave rise to flat petal epidermal cells and also reduced cell proliferation in petals (Crawford et al. 2004). In addition, the reflexed corolla curvature in petunia phmyb1 mutant was associated with defect in petal conical epidermal cell formation (Baumann et al. 2007). To see whether changes in cellular level may account for overall shape changes in PhLA silenced corollas, we investigated the effect of PhLA silencing on petal epidermal cell formation. Adaxial epidermal cells of petals were observed using scanning electron microscopy (SEM). Five regions in a lobe were checked in which three were picked along the midrib and two were on the side (Fig. 4). The SEM micrographs showed that epidermal cells of PhLA silenced flowers in the regions along the midrib (region i, ii, and iii) became flat and their base became irregular; however, the cells on the side (region vi and v) were remained the same (Fig. 4a). Along the midrib, cell sizes at region i of PhLA silenced corollas were no significantly different from those of control corollas; however, the sizes became much larger in the PhLA silenced group than those in the control group (Fig. 4b). At the region iii, cell sizes in the PhLA silenced group were two fold larger than those in the control group. In contrast, on the side of corolla lobes with PhLA silenced, cell sizes at both regions measured remained unchanged when compared to corolla lobes without PhLA silenced (Fig. 4c).

Fig. 4

Effects of silencing PhLA on petal epidermal cells. a SEM micrograph of petal epidermal cells from white flowers of TRV chs infected plants compared to those of TRV chs/la-2 infected plants. Five regions (i–v) on a lobe from both groups of flowers were examined. A petal segment was dissected to illustrate the five regions. Scar bars: 50 μm. b Cell size comparison between petal lobes infected with TRV chs and those infected with TRV chs/la-2 at the regions along mid-ribs (i–iii). c Cell size comparison between petal lobes infected with TRV chs and those infected with TRV chs/la-2 at the regions on margins (iv–v). Blue bars in (b, c) indicate the cell sizes from the TRV chs group, and purple bars indicate those from the TRV chs/la-2 group

Expression of PhLA in wild-type corollas

Since the morphological changes caused by PhLA silencing were restricted in corolla limbs, we investigated the expression patterns of PhLA in corollas at different developmental stages and regions. We divided a corolla into three parts, limb, dilated area, and un-dilated area (Fig. 5a), and analyzed the transcript abundance of PhLA in these parts. Without surprise, the majority of PhLA transcripts were detected at corolla limbs in two petunia cultivars tested in which W115 corolla tubes are long and narrow while Primetime Blue corolla tubes are short and wide (Fig. 5b). Expression profile of PhMYB1 was similar to that of PhLA with highest expression at the limb regions in both cultivars (Fig. 5c). For the developmental stages, corollas were collected from different sizes of flower buds from 10 to 15 mm buds to fully open flowers. We found that PhLA was constantly expressed throughout the developmental stages in both tested cultivars (Additional file 3: Fig. S3). In situ hybridization further confirmed that PhLA transcripts were mostly accumulated at the distal regions of petals from early developmental stages (Fig. 6).

Fig. 5

Expression of PhLA in fully open flowers. a Diagram of a petunia corolla showing three divided regions in the expression analysis. b Relative expression of PhLA in different flower regions of W115 (gray bars) or Primetime Blue (white bars) flowers. c Relative expression of PhMYB1 in different flower regions of W115 (gray bars) or Primetime Blue (white bars) flowers. Transcript abundances of PhLA and PhMYB1 are relative to those in limb regions of Primetime Blue flowers. The data show the mean ± SEM from three biological replicates. Expression of ACTIN gene was used as an internal control. *Indicates significant differences (**P < 0.005)

Fig. 6

Spatial distribution of PhLA and miR319 in petunia flowers. In situ hybridization of longitudinal sections of wild-type petunia flowers. Sections of flowers were probed with PhLA antisense (left panel) or LNA-miR319 probe (central panel). PhLA sense probe (right panel) was used to show the background signals. p, petal; Scar bars: 100 μm

Many CIN-TCPs are post-transcriptionally regulated by miR319, including LANCEOLATE (Ori et al. 2007). The PhLA transcript also contains a miR319 recognition site (Fig. 1a), and therefore, it is highly likely regulated by miR319. To explore whether there is a mutually exclusive expression pattern between PhLA and miR319, LNA-miR319 antisense oligo probe was used to detect miR319 in petunia flowers. Indeed, the strongest signal was detected at proximal site of petals for miR319, especially at the rid region of a petal (Fig. 6).


LA-like genes play divergent roles in shaping plant organs in different Solanaceae species

LANCEOLATE promotes leaf maturation. Timing and location of its expression determine the complexity of tomato leaves (Ori et al. 2007; Shleizer-Burko et al. 2011). Our findings also suggest that differential dynamics of LA activity are corresponding to the growth and maturation of other Solanaceae species as well. The timing and LA expression levels are related to leaf initiation and morphogenesis in eggplant, pepper, and potato (Shleizer-Burko et al. 2011). The low level expression of LA in pepper, a simple leaf species, is correlated with the long initiation stage of its leaf development while eggplant leaves, which show early rise of LA expression, exhibit relatively short initiation and primary morphogenesis stages (Shleizer-Burko et al. 2011). This strong correlation suggests that LA plays a pivotal role in leaf morphogenesis.

We used a conserved region of PhLA to silence LA-like genes in petunia, N. benthamiana, and tomato. Since the fragment shares 91% identity with tomato LANCEOLATE, and it was suggested that a 24 nt fragment with perfect match to target transcripts is sufficient to trigger gene silencing (Lu et al. 2003), LA-like genes should be the primary targets of our VIGS designs. Indeed, an enhanced complexity in tomato leaves was observed and we also found enhanced leaf curvature and expanded leaf margins in N. benthamiana after VIGS (Fig. 2b, c). These results are in agreement with the proposed role of LA in leaf maturation. However, leaf morphology was not altered after PhLA was significantly knockdown in petunia though corolla curvature was enhanced (Figs. 2a, 3a & b). The similar corolla morphological modification was seen also in N. benthamiana after VIGS (Additional file 1: Fig. S1). In contrast, no visible floral morphological changes were observed in tomato after VIGS. A gene specific region of PhLA was also able to trigger gene silencing and cause morphological changes in petunia corollas (Fig. 3a & b). The findings indicate that PhLA is essential for proper petal morphogenesis but may not be essential for leaf development; however, tomato LA may have a more defined role in leaf morphogenesis, and proper development of leaf and flower requires LA in N. benthamiana. It is also possible that other TCP proteins have redundant functions with PhLA on leaf morphogenesis. The functional redundancy has been found in Arabidopsis in which mutations on single CIN-TCP exhibit very mild phenotypic changes in leaves (Schommer et al. 2008) but when expression of multiple members of this group was suppressed, the leaves became extremely large and serrated (Efroni et al. 2008). Taking together, even though LA orthologs share high sequence identities, they may be differentially recruited to control different developmental processes in different Solanaceae species.

PhLA regulates petunia corolla shape independently from PhMYB1

Silencing of PhLA resulted in reflexed corolla (Fig. 3a) and flatted epidermal cells (Fig. 4a) that resembles phenotype of phmyb1 (Baumann et al. 2007). The expression of PhMYB1, however, was not affected when a gene specific region was used for VIGS (Fig. 3b). Transcript abundance of PhLA is higher in flowers than in leaves while PhMYB1 is very abundantly expressed in leaves (Fig. 3b, c). Thus, PhLA does not seem to regulate PhMYB1 at a transcriptional level. A similar result was found in Antirrhinum. Both CINCINNATA and MIXTA are required for conical epidermal cell formation in Antirrhinum while MIXTA transcript abundance was not affected in cin mutants (Crawford et al. 2004). When a conserved sequence was used to silence PhLA, transcript abundance of PhMYB1 was significantly downregulated only in leaves but not in flowers (Fig. 3c). The result may suggest that expression of other LA-like genes are affected when a conserved domain is used for VIGS.

PhLA regulates petal epidermal cell differentiation and corolla limb curvature

Flower shape, color, and texture are important features in attracting animal pollinators (Whitney and Glover 2007), and PhLA is very likely participated in regulation of these important features. The most visible fact caused by PhLA silencing was the reflexed petal curvature. To investigate the possible reasons causing the shape alteration, we examined the changes in petal lobes, and found that the proximal sides of petal lobes became narrower while their distal sides further expanded in a PhLA silenced flower (Table 1). Surface curvature can be expressed using Gaussian curvature (Nath et al. 2003). When a surface is evenly expanded, a flat surface is maintained and the Gaussian curvature is zero. In contrast, in our case, the margin of a corolla limb was expended faster than the central region, and as a result, a negative curvature was generated. The examination on cellular level confirmed the idea. In the five areas examined in petunia corollas, the cell sizes at the distal side along the midribs (ii & iii) were substantially larger in PhLA silenced corollas while the sizes at the proximal side (i) remained unchanged (Fig. 4). This result indicates that the expansion on the distal sides of lobes in PhLA silenced corolla was most likely due to enlargement of cell size but not enhancement of cell proliferation. Despite the expansion of distal side of petal lobes, area sizes of the lobes remained unchanged. Therefore, the overall cell number of PhLA silenced corollas should be less than that of corollas without PhLA silencing. In addition, the cell sizes and shapes on the side (iv & v) of a petal lobe were not changed (Fig. 4). Mutations in CIN of Antirrhinum also resulted in flatter epidermal cells, but the effect was stronger in edges of dorsal petals but cells close to midribs of ventral petals were less affected (Crawford et al. 2004). Therefore, PhLA and CIN may play related yet different roles in petal morphogenesis. Transgenic Cyclamen with ectopically expressed chimeric cyclamen TCP repressor produced flowers with crinkly edges (Tanaka et al. 2011). In addition, transgenic tomato with a miR319 driven by FIL promoter produced flowers with increased curvature and also crinkly edges (Ori et al. 2007). Therefore, a pronounced morphological change on petal edges may be observed when activity of multiple CIN-TCPs is suppressed.

Both PhLA and PhMYB1 are important for petal conical epidermal cell formation. It was shown that alterations on the epidermal cell shapes change overall presentation of corollas (Baumann et al. 2007). In addition, similar to mixta mutants in Antirrhinum, petals of phmyb1 are also paler. The color change is due to a difference of light reflection between conical cells and flat cells (Baumann et al. 2007; Noda et al. 1994). The visual effects of conical cells to help get attention from pollinators have been considered to be a reason why many Angiosperm species have evolved flowers with conical epidermal cells (Kay et al. 1981; Whitney et al. 2011). Though Antirrhinum flowers carrying mixta alleles are indeed less visited by their nature pollinators, bumblebees, than wild-type flowers, the enhanced pollination success resulted from conical cells can still be observed when white flowers were compared (Glover and Martin 1998). It was then showed that the conical-shape of petal cells help pollinators to grip on flowers (Whitney et al. 2009). The changes in epidermal cell shapes may affect pollinator preference due to petal reflexing, which reduces the visual sizes of flowers (Baumann et al. 2007). Indeed, hawkmoths prefer to visit flowers with large corolla limbs (Venail et al. 2010). The evidence provides new aspects for importance of CIN-TCPs in regulation on petal epidermal cell differentiation and petal morphogenesis that may be important for pollinator attraction. The overall expression patterns of both PhLA and PhMYB1 are similar in the two flowers with different shapes in which the flowers of Primetime Blue have a short and wide tube while tubes of W115 flowers are long and narrow (Fig. 5). The transcripts of both PhLA and PhMYB1 are most abundant in the limb regions; however, transcript abundance of PhLA is significantly higher in W115 flower than in Primetime Blue flowers while transcript abundance of PhMYB1 in Primetime Blue flowers is more than 100 folds of that in W115 flowers (Fig. 5). It should be interesting to know whether the different levels of expression in these two genes contribute to flower shape regulation or not.

Mutually excluded spatial distribution between PhLA transcripts and miR319 during flower development

Similar to tomato LA, the PhLA transcript contains a miR319 recognition site, and therefore, is a potential target of this miRNA. In tomato, differential spatial distribution of LA and miR319 was observed during early leaf development in tomato (Ori et al. 2007). However, miR319 did not completely exclude the expression of LA, and overlapping expression domains of both can be found at shoot apical meristem, young leaf primordia and developing leaflets. Therefore, miR319 serves a modulator to fine tune timing and location of LA expression (Ori et al. 2007). PhLA is predominately expressed in corolla limbs (Fig. 5). We, therefore, explored the potential spatial regulation of PhLA by miR319. In situ hybridization revealed the potential spatial antagonic regulation (Fig. 6). Similar to the findings in tomato leaf development, PhLA and miR319 are differentially expressed in developing petunia corollas, and overlapping expression regions were also found. Therefore, miR319 should also play a role as a CIN-TCP modulator in regulating petal curvature.


Petunia LANCEOLATE ortholog, PhLA, may have a more define role in shaping petunia flower. Silencing of PhLA clearly enhances the curvature of petunia corolla lobes, but shows no visible effect on leaf morphology. The enhanced petal curvature is likely due to defects of conical epidermal cell formation, and the alteration of petal curvature and epidermal cell shape may affect pollinator attraction of the flower. Our results demonstrate the importance of LA-like activity to morphological regulation in Solanaceae species, and also show that VIGS is a powerful technique in functional studies in close species.

Availability of data and materials

All of the data and materials are available upon request.


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We appreciate Dr. Dinesh-Kumar, University of California, Davis, in providing the TRV constructs, and the supply of W115 Petunia seeds by Dr. Tom Gerats, Radboud University, Nijmegen. We also would like to thank Dr. Chiu-Ping Cheng for tomato cv. 5915 seeds.


This work was supported by the Ministry of Science and Technology, Taiwan (Grant number 97-2313-B-002-022-MY3, 106-2313-B-002-014-MY3), by National Taiwan University, and by Academia Sinica, Taiwan.

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HWC and P-LL carried out most of the experiments and data collection. C-NW helped design the experimental plan and also prepared the manuscript. He also provided the ISH experiments. H-JH helped to finish the SEM results. J-CC initiated the project, executed parts of VIGS experiments, had the main role on manuscript writing. All authors read and approved the final manuscript.

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Correspondence to Jen-Chih Chen.

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Supplementary information

Additional file 1: Figure S1.

Effects of silencing LA-like genes on Nicotiana benthamiana flower. (a) Front view and (b) side view of N. benthamiana flowers with or without LA-like genes silenced. Flowers infected with TRV chs/la-1, which contains a conserved fragment of PhLA cDNA, shows reflexed corolla lobes.

Additional file 2: Figure S2.

Schematic representation of a petunia flower. The scheme shows the locations of measurements indicated in Table 1. W: lobe width; L: lobe length; D: Distance between sinuses.

Additional file 3: Figure S3.

Expression of PhLA during corolla development. Expression profiles of PhLA in two different petunia cultivars, W115 and Primetime Blue, during their corolla elongation were examined. Corolla sizes (1, 0–1 cm; 2, 1–2 cm; 3, 2–3 cm; 4, 3–4 cm; 5, open flower for Primetime Blue and 4–5 cm for W115; 6, open flower for W115).

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Chen, H., Lee, P., Wang, C. et al. Silencing of PhLA, a CIN-TCP gene, causes defected petal conical epidermal cell formation and results in reflexed corolla lobes in petunia. Bot Stud 61, 24 (2020).

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  • Petunia
  • Virus-induced gene silencing
  • Conical epidermal cell
  • Petal curvature