Abdelwahab MF, Kurtán T, Mándi A, Müller WEG, Fouad MA, Kamel MS, Liu Z, Ebrahim W, Daletos G, Proksch P (2018) Induced secondary metabolites from the endophytic fungus Aspergillus versicolor through bacterial co-culture and OSMAC approaches. Tetrahedron Lett 59(27):2647–2652. https://doi.org/10.1016/j.tetlet.2018.05.067
Article
CAS
Google Scholar
Ali AH, Radwan U, El-Zayat S, El-Sayed MA (2019) The role of the endophytic fungus, Thermomyces lanuginosus, on mitigation of heat stress to its host desert plant Cullen plicata. Biologia Futura 70(1):1–7. https://doi.org/10.1556/019.70.2019.01
Article
CAS
PubMed
Google Scholar
Becker R, Dohla B, Nitz S, Vitzthum OG (1987) Identification of the peasy off-flavour note in central African coffees. In: Association for Science and Information on Coffee (ASIC), Collequiem Scientifique International Sur Le Café, vol 12. Montreux, Switzerland, pp. 203–215.
Begum SR, Tamilselvi KS (2019) Biotechnological application of Talaromyces radicus associated with Cucumis dipsaceus Ehrenb. Ex Spach Plant Arch 19(1):1938–1946
Google Scholar
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B (methodological) 57(1):289–300. https://doi.org/10.1111/j.2517-6161.1995.tb02031.x
Article
Google Scholar
Bennett JW, Inamdar AA (2015) Are some fungal volatile organic compounds (VOCs) mycotoxins? Toxins 7(9):3785–3804. https://doi.org/10.3390/toxins7093785
Article
CAS
PubMed
PubMed Central
Google Scholar
Bigirimana J, Gerard A, Mota-Sanchez D, Gut LJ (2018) Options for managing Antestiopsis thunbergii (Hemiptera: Pentatomidae) and the relationship of bug density to the occurrence of potato taste defect in coffee. Fla Entomol 101(4):580–586. https://doi.org/10.1653/024.101.0418
Article
Google Scholar
Bjurman J, Kristensson J (1992) Volatile production by Aspergillus versicolor as a possible cause of odor in houses affected by fungi. Mycopathologia 118(3):173–178. https://doi.org/10.1007/BF00437151
Article
CAS
Google Scholar
Carbonetto B, Nidelet T, Guezenec S, Perez M, Segond D, Sicard D (2020) Interactions between Kazachstania humilis yeast species and lactic acid bacteria in sourdough. Microorganisms 8(2):240. https://doi.org/10.3390/microorganisms8020240
Article
CAS
PubMed Central
Google Scholar
Cheng TB, Reineccius GA, Bjorklund JA, Leete E (1991) Biosynthesis of 2-methoxy-3-isopropylpyrazine in Pseudomonas perolens. J Arg Food Chem 39(5):1009–1012. https://doi.org/10.1021/jf00005a042
Article
CAS
Google Scholar
Czerny M, Grosch W (2000) Potent odorants of raw Arabica coffee. Their changes during roasting. J Arg Food Chem 48(3):868–872. https://doi.org/10.1021/jf990609n
Article
CAS
Google Scholar
De Bruyn F, Zhang SJ, Pothakos V, Torres J, Lambot C, Moroni AV, Callanan M, Sybesma W, Weckx S, De Vuyst L (2017) Exploring the impacts of postharvest processing on the microbiota and metabolite profiles during green coffee bean production. Appl Environ Microb 83(1):e02398-e12316. https://doi.org/10.1128/AEM.02398-16
Article
Google Scholar
de Oliveira Junqueira AC, de Melo Pereira GV, Medina JDC, Alvear MCR, Rosero R, de Carvalho Neto DP, Enríquez HG, Soccol CR (2019) First description of bacterial and fungal communities in Colombian coffee beans fermentation analysed using Illumina-based amplicon sequencing. Sci Rep-UK 9(1):1–10. https://doi.org/10.1038/s41598-019-45002-8
Article
CAS
Google Scholar
Drewnowski A, Gomez-Carneros C (2000) Bitter taste, phytonutrients, and the consumer: a review. Am J Clin Nutr 72(6):1424–1435. https://doi.org/10.1093/ajcn/72.6.1424
Article
CAS
PubMed
Google Scholar
Edgar RC (2013) UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methords 10(10):996–998. https://doi.org/10.1038/nmeth.2604
Article
CAS
Google Scholar
Edgar RC (2016) UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing. BioRxiv. https://doi.org/10.1101/081257
Article
Google Scholar
Gallois A, Grimont PAD (1985) Pyrazines responsible for the potatolike odor produced by some Serratia and Cedecea strains. Appl Environ Microb 50(4):1048–1051. https://doi.org/10.1128/aem.50.4.1048-1051.1985
Article
CAS
Google Scholar
Gueule D, Fourny G, Ageron E, Le Fleche-Mateos A, Vandenbogaert M, Grimont PAD, Cilas C (2015) Pantoea coffeiphila sp. Nov., cause of the ‘potato taste’of Arabica coffee from the African Great Lakes region. Int J Syst Evol Micr 65(Pt1):23–29. https://doi.org/10.1099/ijs.0.063545-0
Article
CAS
Google Scholar
Hamdouche Y, Meile JC, Nganou DN, Durand N, Teyssier C, Montet D (2016) Discrimination of post-harvest coffee processing methods by microbial ecology analyses. Food Control 65:112–120. https://doi.org/10.1016/j.foodcont.2016.01.022
Article
CAS
Google Scholar
Ihrmark K, Bödeker IT, Cruz-Martinez K, Friberg H, Kubartova A, Schenck J, Strid Y, Stenlid J, Brandström-Durling M, Clemmensen KE (2012) New primers to amplify the fungal ITS2 region–evaluation by 454-sequencing of artificial and natural communities. FEMS Micrbiol Ecol 82(3):666–677. https://doi.org/10.1111/j.1574-6941.2012.01437.x
Article
CAS
Google Scholar
Jackels SC, Marshall EE, Omaiye AG, Gianan RL, Lee FT, Jackels CF (2014) GCMS investigation of volatile compounds in green coffee affected by potato taste defect and the Antestia bug. J Agr Food Chem 62(42):10222–10229. https://doi.org/10.1021/jf5034416
Article
CAS
Google Scholar
Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AF, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM, Douglas B, Drenkhan T, Eberhardt U, Duenas M, Grebenc T, Griffith GW, Hartmann M, Kirk PM, Kohout P, Larsson E, Lindahl BD, Lucking R, Martin MP, Matheny PB, Nguyen NH, Niskanen T, Oja J, Peay KG, Peintner U, Peterson M, Poldmaa K, Saag L, Saar I, Schussler A, Scott JA, Senes C, Smith ME, Suija A, Taylor DL, Telleria MT, Weiss M, Larsson KH (2013) Towards a unified paradigm for sequence-based identification of fungi. Mol Ecol 22(21):5271–5277. https://doi.org/10.1111/mec.12481
Article
CAS
PubMed
Google Scholar
Liardon R, Spadone JC, Braendlin N, Dentan E (1990) Multidisciplinary study of Rio flavour in Brazilian green coffee. In: Thirteenth international scientific colloquium on coffee, Association Scientifique Internationale du Cafe, Paris.
Lillbro M (2005) Biocontrol of Penicillium roqueforti on grain: A comparison of mode of action of several yeast species. Dissertation. Swedish University of Agricultural Sciences.
Matsuura Y, Hosokawa T, Serracin M, Tulgetske GM, Miller TA, Fukatsu T (2014) Bacterial symbionts of a devastating coffee plant pest, the stinkbug Antestiopsis thunbergii (Hemiptera: Pentatomidae). Appl Environ Microb 80(12):3769–3775. https://doi.org/10.1128/AEM.00554-14
Article
CAS
Google Scholar
Mutua JM (2000) Post harvest handling and processing of coffee in African countries. FAO, Italy
Google Scholar
Padder SA, Prasad R, Shah AH (2018) Quorum sensing: a less known mode of communication among fungi. Microbio Res 210:51–58. https://doi.org/10.1016/j.micres.2018.03.007
Article
Google Scholar
Perez MF, Díaz MA, Pereyra MM, Córdoba JM, Isas AS, Sepúlveda M, Ramallo J, Dib JR (2019) Biocontrol features of Clavispora lusitaniae against Penicillium digitatum on lemons. Postharvest Biol Tec 155:57–64. https://doi.org/10.1016/j.postharvbio.2019.05.012
Article
Google Scholar
Prathyusha A, Annavarapu H, Bramhachari PV (2019) Methods for the detection and quantification of quorum-sensing signals in food spoilage. In: Bramhachari P (ed) Implication of quorum sensing and biofilm formation in medicine, Agriculture and Food Industry. Springer, Singapore
Google Scholar
Pridham TG, Raper KB (1950) Ashbya gossypii - Its significance in nature and in the laboratory. Mycologia 42(5):603–623. https://doi.org/10.1080/00275514.1950.12017863
Article
Google Scholar
Rahmadi A, Fleet GH (2008) The occurrence of mycotoxigenic moulds in cocoa beans from Indonesia and Queensland, Australia. Paper presented at the International Seminar on Food Science.
Roland WSU, van Buren L, Gruppen H, Driesse M, Gouka RJ, Smit G, Vincken J-P (2013) Bitter taste receptor activation by flavonoids and isoflavonoids: modeled structural requirements for activation of hTAS2R14 and hTAS2R39. J Agr Food Chem 61(44):10454–10466. https://doi.org/10.1021/jf403387p
Article
CAS
Google Scholar
Siebert KJ (1999) Modeling the flavor thresholds of organic acids in beer as a function of their molecular properties. Food Qual Prefer 10(2):129–137. https://doi.org/10.1016/S0950-3293(98)00059-7
Article
Google Scholar
Silva CF, Batista LR, Abreu LM, Dias ES, Schwan RF (2008) Succession of bacterial and fungal communities during natural coffee (Coffea arabica) fermentation. Food Microbiol 25(8):951–957. https://doi.org/10.1016/j.fm.2008.07.003
Article
CAS
PubMed
Google Scholar
Specialty Coffee Association (2022) http://www.sca.coffee. Accessed 15 Dec 2020.
Torok A, Mizik T, Jambor A (2018) The competitiveness of global coffee trade. Int J Econ Financial Issues 8(5):1. https://doi.org/10.32479/ijefi.6692
Article
CAS
Google Scholar
Vega FE, Posada F, Peterson SW, Gianfagna TJ, Chaves F (2006) Penicillium species endophytic in coffee plants and ochratoxin A production. Mycologia 98(1):31–42. https://doi.org/10.3852/mycologia.98.1.31
Article
CAS
PubMed
Google Scholar
Viegas C, Pacífico C, Faria T, de Oliveira AC, Caetano LA, Carolino E, Gomes AQ, Viegas S (2017) Fungal contamination in green coffee beans samples: a public health concern. J Tox Env Health Part A 80(13–15):719–728. https://doi.org/10.1080/15287394.2017.1286927
Article
CAS
Google Scholar
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Micro 73(16):5261–5267. https://doi.org/10.1128/AEM.00062-07
Article
CAS
Google Scholar
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols 18(1):315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
Article
Google Scholar